Yasuo Tabei

CoRR, 2024

A Branch-and-Bound Approach to Efficient Classification and Retrieval of Documents.

[BibT_eX]

[DOI]

Kotaro Ii

Hiroto Saigo

Proceedings of the 13th International Conference on Pattern Recognition Applications and Methods, 2024

2023

Multi-agent statistical discriminative sub-trajectory mining and an application to NBA basketball.

[BibT_eX]

[DOI]

CoRR, 2023

2022

Stat-DSM: Statistically Discriminative Sub-Trajectory Mining With Multiple Testing Correction.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2022

LZRR: LZ77 parsing with right reference.

[BibT_eX]

[DOI]

Inf. Comput., 2022

An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space.

[BibT_eX]

[DOI]

Proceedings of the 49th International Colloquium on Automata, Languages, and Programming, 2022

2021

DyFT: a dynamic similarity search method on integer sketches.

[BibT_eX]

[DOI]

Knowl. Inf. Syst., 2021

Block trees.

[BibT_eX]

[DOI]

Alberto Ordóñez Pereira

J. Comput. Syst. Sci., 2021

Sparse Nonnegative Interaction Models.

[BibT_eX]

[DOI]

IEEE Access, 2021

Optimal-Time Queries on BWT-Runs Compressed Indexes.

[BibT_eX]

[DOI]

Proceedings of the 48th International Colloquium on Automata, Languages, and Programming, 2021

Fréchet Kernel for Trajectory Data Analysis.

[BibT_eX]

[DOI]

Proceedings of the SIGSPATIAL '21: 29th International Conference on Advances in Geographic Information Systems, 2021

R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space.

[BibT_eX]

[DOI]

Proceedings of the 32nd Annual Symposium on Combinatorial Pattern Matching, 2021

2020

PARASOL: a hybrid approximation approach for scalable frequent itemset mining in streaming data.

[BibT_eX]

[DOI]

Yoshitaka Yamamoto

Koji Iwanuma

J. Intell. Inf. Syst., 2020

Dynamic Path-decomposed Tries.

[BibT_eX]

[DOI]

ACM J. Exp. Algorithmics, 2020

A compressed dynamic self-index for highly repetitive text collections.

[BibT_eX]

[DOI]

Inf. Comput., 2020

Space-Efficient Feature Maps for String Alignment Kernels.

[BibT_eX]

[DOI]

Rasmus Pagh

Data Sci. Eng., 2020

Faster Queries on BWT-runs Compressed Indexes.

[BibT_eX]

[DOI]

CoRR, 2020

Enumeration of LCP values, LCP intervals and Maximal repeats in BWT-runs Bounded Space.

[BibT_eX]

[DOI]

CoRR, 2020

Automatically mining Relevant Variable Interactions Via Sparse Bayesian Learning.

[BibT_eX]

[DOI]

Proceedings of the 25th International Conference on Pattern Recognition, 2020

Dynamic Similarity Search on Integer Sketches.

[BibT_eX]

[DOI]

Proceedings of the 20th IEEE International Conference on Data Mining, 2020

Succinct Trit-array Trie for Scalable Trajectory Similarity Search.

[BibT_eX]

[DOI]

Proceedings of the SIGSPATIAL '20: 28th International Conference on Advances in Geographic Information Systems, 2020

2019

Statistically Discriminative Sub-trajectory Mining.

[BibT_eX]

[DOI]

CoRR, 2019

Approximate-Closed-Itemset Mining for Streaming Data Under Resource Constraint.

[BibT_eX]

[DOI]

Yoshitaka Yamamoto

Koji Iwanuma

CoRR, 2019

Network-based characterization of drug-protein interaction signatures with a space-efficient approach.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2019

Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.

[BibT_eX]

[DOI]

Bioinform., 2019

Statistically Discriminative Sub-trajectory Mining with Multiple Testing Correction.

[BibT_eX]

[DOI]

Proceedings of the 27th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2019

Conversion from RLBWT to LZ77.

[BibT_eX]

[DOI]

Proceedings of the 30th Annual Symposium on Combinatorial Pattern Matching, 2019

b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018

Scalable Alignment Kernels via Space-Efficient Feature Maps.

[BibT_eX]

[DOI]

Rasmus Pagh

CoRR, 2018

Scalable Machine Learning on Compact Data Representations.

[BibT_eX]

[DOI]

Proceedings of the International Symposium on Information Theory and Its Applications, 2018

Entire Regularization Path for Sparse Nonnegative Interaction Model.

[BibT_eX]

[DOI]

Mirai Takayanagi

Hiroto Saigo

Proceedings of the IEEE International Conference on Data Mining, 2018

A Dynamic Compressed Self-Index for Highly Repetitive Text Collections.

[BibT_eX]

[DOI]

Proceedings of the 2018 Data Compression Conference, 2018

2017

Scalable Similarity Search for Molecular Descriptors.

[BibT_eX]

[DOI]

Proceedings of the Similarity Search and Applications - 10th International Conference, 2017

Bayesian Dynamic Mode Decomposition.

[BibT_eX]

[DOI]

Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

2016

Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.

[BibT_eX]

[DOI]

Masaaki Kotera

Bioinform., 2016

siEDM: An Efficient String Index and Search Algorithm for Edit Distance with Moves.

[BibT_eX]

[DOI]

Algorithms, 2016

Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices.

[BibT_eX]

[DOI]

Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

2015

Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.

[BibT_eX]

[DOI]

Masaaki Kotera

Bioinform., 2015

Online Self-Indexed Grammar Compression.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2015

Access, Rank, and Select in Grammar-compressed Strings.

[BibT_eX]

[DOI]

Djamal Belazzougui

Patrick Hagge Cording

Proceedings of the Algorithms - ESA 2015, 2015

Queries on LZ-Bounded Encodings.

[BibT_eX]

[DOI]

Alberto Ordóñez Pereira

Proceedings of the 2015 Data Compression Conference, 2015

2014

Rank, select and access in grammar-compressed strings.

[BibT_eX]

[DOI]

Djamal Belazzougui

CoRR, 2014

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

[BibT_eX]

[DOI]

Bioinform., 2014

Improved ESP-index: A Practical Self-index for Highly Repetitive Texts.

[BibT_eX]

[DOI]

Proceedings of the Experimental Algorithms - 13th International Symposium, 2014

Online Pattern Matching for String Edit Distance with Moves.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2014

Finding Ambiguous Patterns on Grammar Compressed String.

[BibT_eX]

[DOI]

Proceedings of the New Frontiers in Artificial Intelligence, 2014

Fully Online Grammar Compression in Constant Space.

[BibT_eX]

[DOI]

Shirou Maruyama

Proceedings of the Data Compression Conference, 2014

2013

Scalable prediction of compound-protein interactions using minwise hashing.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2013

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2013

Inferring protein domains associated with drug side effects based on drug-target interaction network.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2013

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.

[BibT_eX]

[DOI]

Bioinform., 2013

Fully-Online Grammar Compression.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2013

Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints.

[BibT_eX]

[DOI]

Proceedings of the 19th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2013

A Succinct Grammar Compression.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 24th Annual Symposium, 2013

2012

PoSSuM: a database of similar protein-ligand binding and putative pockets.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2012

Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.

[BibT_eX]

[DOI]

Bioinform., 2012

Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

Variable-Length Codes for Space-Efficient Grammar-Based Compression.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2012

2011

Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees.

[BibT_eX]

[DOI]

Koji Tsuda

Proceedings of the Eleventh SIAM International Conference on Data Mining, 2011

LGM: Mining Frequent Subgraphs from Linear Graphs.

[BibT_eX]

[DOI]

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2011

2010

Single versus Multiple Sorting in All Pairs Similarity Search.

[BibT_eX]

[DOI]

Proceedings of the 2nd Asian Conference on Machine Learning, 2010

2009

A local multiple alignment method for detection of non-coding RNA sequences.

[BibT_eX]

[DOI]