Yasin Bakis

According to our database, Yasin Bakis authored at least 11 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Computational metadata generation methods for biological specimen image collections.

Kevin Karnani, Joel Pepper, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen, Jane Greenberg

Int. J. Digit. Libr., June, 2024

VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images.

M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Wasila M. Dahdul, Anuj Karpatne

CoRR, 2024

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution.

Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne

CoRR, 2024

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images.

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne

CoRR, 2024

2023

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks.

Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

2022

Toward a Flexible Metadata Pipeline for Fish Specimen Images.

Dom Jebbia, Xiaojun Wang, Yasin Bakis, Henry L. Bart Jr., Jane Greenberg

Proceedings of the Metadata and Semantic Research - 16th Research Conference, 2022

2021

Automatic Metadata Generation for Fish Specimen Image Collections.

Joel Pepper, Jane Greenberg, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2021

2020

Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species.

Jeremy Leipzig, Yasin Bakis, Xiaojun Wang, Mohannad Elhamod, Kelly Diamond, Wasila M. Dahdul, Anuj Karpatne, A. Murat Maga, Paula M. Mabee, Henry L. Bart Jr., Jane Greenberg

Proceedings of the Metadata and Semantic Research - 14th International Conference, 2020

2013

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure.

Yasin Bakis, Hasan H. Otu, Nivart Taçi, Cem Meydan, Nee Bilgin, Sirri Yüzbaiolu, Osman Ugur Sezerman

BMC Bioinform., 2013

2009

An entropy based heuristic model for predicting functional sub-type divisions of protein families.

Deniz Yörükoglu, Yasin Bakis, Osman Ugur Sezerman

Proceedings of the Genetic and Evolutionary Computation Conference, 2009

Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method.

Yasin Bakis, Osman Ugur Sezerman, M. Tekin Babaç, Cem Meydan

Proceedings of the Genetic and Evolutionary Computation Conference, 2009