Yara Seif

According to our database, Yara Seif authored at least 5 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.

Anand V. Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R. Lamoureux, Gaoyuan Li, Joshua T. Burrows, Siddharth Chauhan, Zachary B. Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O. Palsson, Daniel C. Zielinski

PLoS Comput. Biol., 2024

2019

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.

Yara Seif, Jonathan M. Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuñiga, Jared Broddrick, Karsten Zengler, Bernhard O. Palsson

PLoS Comput. Biol., 2019

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques

PLoS Comput. Biol., 2019

2018

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.

Erol S. Kavvas, Yara Seif, James T. Yurkovich, Charles J. Norsigian, Saugat Poudel, William W. Greenwald, Sankha Ghatak, Bernhard O. Palsson, Jonathan M. Monk

BMC Syst. Biol., 2018

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.

Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand Sastry, Erol S. Kavvas, Yara Seif, Larry Smarr, Bernhard O. Palsson

BMC Syst. Biol., 2018