Yaohang Li

Orcid: 0000-0003-0178-1876

Affiliations:
  • Old Dominion University, Norfolk, USA


According to our database1, Yaohang Li authored at least 140 papers between 2001 and 2024.

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Bibliography

2024
TopoLa: a novel embedding framework for understanding complex networks.
CoRR, 2024

MMAC-Copilot: Multi-modal Agent Collaboration Operating System Copilot.
CoRR, 2024

TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning.
Briefings Bioinform., 2024

BenchLMM: Benchmarking Cross-Style Visual Capability of Large Multimodal Models.
Proceedings of the Computer Vision - ECCV 2024, 2024

2023
MSDRP: a deep learning model based on multisource data for predicting drug response.
Bioinform., September, 2023

DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data.
Bioinform., May, 2023

CRMSS: predicting circRNA-RBP binding sites based on multi-scale characterizing sequence and structure features.
Briefings Bioinform., January, 2023

GIFDTI: Prediction of Drug-Target Interactions Based on Global Molecular and Intermolecular Interaction Representation Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

A Comparison of Topologically Associating Domain Callers Based on Hi-C Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence of GO Terms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Retrieve and rerank for automated ICD coding via Contrastive Learning.
J. Biomed. Informatics, 2023

CellBRF: a feature selection method for single-cell clustering using cell balance and random forest.
Bioinform., 2023

2022
Feature and Nuclear Norm Minimization for Matrix Completion.
IEEE Trans. Knowl. Data Eng., 2022

A Pseudo Label-Wise Attention Network for Automatic ICD Coding.
IEEE J. Biomed. Health Informatics, 2022

Biomedical Data and Deep Learning Computational Models for Predicting Compound-Protein Relations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Accurate Prediction of Human Essential Proteins Using Ensemble Deep Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

BACPI: a bi-directional attention neural network for compound-protein interaction and binding affinity prediction.
Bioinform., 2022

IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism.
Bioinform., 2022

Image Synthesis Using Conditional GANs for Selective Laser Melting Additive Manufacturing.
Proceedings of the International Joint Conference on Neural Networks, 2022

Point Cloud-based Variational Autoencoder Inverse Mappers (PC-VAIM) - An Application on Quantum Chromodynamics Global Analysis.
Proceedings of the 21st IEEE International Conference on Machine Learning and Applications, 2022

2021
Protein interaction networks: centrality, modularity, dynamics, and applications.
Frontiers Comput. Sci., February, 2021

A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

DMFLDA: A Deep Learning Framework for Predicting lncRNA-Disease Associations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

A Deep Learning Framework for Identifying Essential Proteins by Integrating Multiple Types of Biological Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

De Novo Prediction of Drug-Target Interactions Using Laplacian Regularized Schatten p-Norm Minimization.
J. Comput. Biol., 2021

A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals.
Bioinform., 2021

Parallel computing for genome sequence processing.
Briefings Bioinform., 2021

A novel graph attention model for predicting frequencies of drug-side effects from multi-view data.
Briefings Bioinform., 2021

Computational drug repositioning based on multi-similarities bilinear matrix factorization.
Briefings Bioinform., 2021

DeepDTAF: a deep learning method to predict protein-ligand binding affinity.
Briefings Bioinform., 2021

Biomedical data and computational models for drug repositioning: a comprehensive review.
Briefings Bioinform., 2021

Variational Autoencoder Inverse Mapper: An End-to-End Deep Learning Framework for Inverse Problems.
Proceedings of the International Joint Conference on Neural Networks, 2021

A Survey of Machine Learning-Based Physics Event Generation.
Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Simulation of Electron-Proton Scattering Events by a Feature-Augmented and Transformed Generative Adversarial Network (FAT-GAN).
Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Multi-Label Classification of ICD-10 Coding & Clinical Notes Using MIMIC & CodiEsp.
Proceedings of the IEEE EMBS International Conference on Biomedical and Health Informatics, 2021

2020
Predicting Human lncRNA-Disease Associations Based on Geometric Matrix Completion.
IEEE J. Biomed. Health Informatics, 2020

miRTMC: A miRNA Target Prediction Method Based on Matrix Completion Algorithm.
IEEE J. Biomed. Health Informatics, 2020

Constructing Disease Similarity Networks Based on Disease Module Theory.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Identification of Protein Complexes by Using a Spatial and Temporal Active Protein Interaction Network.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

United Neighborhood Closeness Centrality and Orthology for Predicting Essential Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Gaussian variant of Freivalds' algorithm for efficient and reliable matrix product verification.
Monte Carlo Methods Appl., 2020

Simulation of electron-proton scattering events by a Feature-Augmented and Transformed Generative Adversarial Network (FAT-GAN).
CoRR, 2020

DeepFrag-k: a fragment-based deep learning approach for protein fold recognition.
BMC Bioinform., 2020

Protein-protein interaction site prediction through combining local and global features with deep neural networks.
Bioinform., 2020

De novo Prediction of Drug-Target Interaction via Laplacian Regularized Schatten-p Norm Minimization.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

cFAT-GAN: Conditional Simulation of Electron-Proton Scattering Events with Variate Beam Energies by a Feature Augmented and Transformed Generative Adversarial Network.
Proceedings of the 19th IEEE International Conference on Machine Learning and Applications, 2020

A novel approach based on deep residual learning to predict drug's anatomical therapeutic chemical code.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
MGT-SM: A Method for Constructing Cellular Signal Transduction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Automated ICD-9 Coding via A Deep Learning Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Overlap matrix completion for predicting drug-associated indications.
PLoS Comput. Biol., 2019

Decoding the Structural Keywords in Protein Structure Universe.
J. Comput. Sci. Technol., 2019

DeepEP: a deep learning framework for identifying essential proteins.
BMC Bioinform., 2019

Drug repositioning based on bounded nuclear norm regularization.
Bioinform., 2019

Clinical big data and deep learning: Applications, challenges, and future outlooks.
Big Data Min. Anal., 2019

AttentionDTA: prediction of drug-target binding affinity using attention model.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

LncRNA-disease association prediction through combining linear and non-linear features with matrix factorization and deep learning techniques.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Efficient Randomized Algorithms for the Fixed-Precision Low-Rank Matrix Approximation.
SIAM J. Matrix Anal. Appl., 2018

Computational drug repositioning using low-rank matrix approximation and randomized algorithms.
Bioinform., 2018

Prediction of lncRNA-disease associations based on inductive matrix completion.
Bioinform., 2018

A survey of matrix completion methods for recommendation systems.
Big Data Min. Anal., 2018

PBMarsNet: A Multivariate Adaptive Regression Splines Based Method to Reconstruct Gene Regulatory Networks.
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

Faster Matrix Completion Using Randomized SVD.
Proceedings of the IEEE 30th International Conference on Tools with Artificial Intelligence, 2018

Using Deep Neural Network to Predict Drug Sensitivity of Cancer Cell Lines.
Proceedings of the Intelligent Computing Theories and Application, 2018

A Deep Learning Framework for Identifying Essential Proteins Based on Protein-Protein Interaction Network and Gene Expression Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Disease Inference with Symptom Extraction and Bidirectional Recurrent Neural Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Identifying At-Risk Students for Early Interventions - A Time-Series Clustering Approach.
IEEE Trans. Emerg. Top. Comput., 2017

Calcium Ion Fluctuations Alter Channel Gating in a Stochastic Luminal Calcium Release Site Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A GPU-based large-scale Monte Carlo simulation method for systems with long-range interactions.
J. Comput. Phys., 2017

Block Conjugate Gradient algorithms for least squares problems.
J. Comput. Appl. Math., 2017

A Fast Implementation of Singular Value Thresholding Algorithm using Recycling Rank Revealing Randomized Singular Value Decomposition.
CoRR, 2017

Relating Diseases Based on Disease Module Theory.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Single-Pass PCA of Large High-Dimensional Data.
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

Validating the Correctness of Outsourced Computational Tasks Using Pseudorandom Number Generators.
Proceedings of the 15th IEEE Intl Conf on Dependable, 2017

2016
RCD+: Fast loop modeling server.
Nucleic Acids Res., 2016

A load-balancing workload distribution scheme for three-body interaction computation on Graphics Processing Units (GPU).
J. Parallel Distributed Comput., 2016

Predicting drug-target interaction using positive-unlabeled learning.
Neurocomputing, 2016

Big data-enabled multiscale serviceability analysis for aging bridges<sup>☆</sup>.
Digit. Commun. Networks, 2016

A Rank Revealing Randomized Singular Value Decomposition (R3SVD) Algorithm for Low-rank Matrix Approximations.
CoRR, 2016

A Revisit of Block Power Methods for Finite State Markov Chain Applications.
CoRR, 2016

Efficient randomized algorithms for adaptive low-rank factorizations of large matrices.
CoRR, 2016

FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information.
BMC Bioinform., 2016

An Apache Spark Implementation of Block Power Method for Computing Dominant Eigenvalues and Eigenvectors of Large-Scale Matrices.
Proceedings of the 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), 2016

What Differentiates News Articles with Short and Long Shelf Lives? A Case Study on News Articles at Bloomberg.com.
Proceedings of the 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), 2016

Malware Sequence Alignment.
Proceedings of the 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), 2016

Coarse-Grained Contact Potential Helps Improve Fold Recognition Sensitivity in Template-Based Protein Structure Modeling.
Proceedings of the 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), 2016

2015
Gaining competitive intelligence from social media data: Evidence from two largest retail chains in the world.
Ind. Manag. Data Syst., 2015

Using Workflow Technology to Create Scenario-based Workflows for Information Security Education: Scenario-based Workflows (Abstract Only).
Proceedings of the 46th ACM Technical Symposium on Computer Science Education, 2015

Understanding Mobile Banking Applications' Security risks through Blog Mining and the Workflow Technology.
Proceedings of the International Conference on Information Systems, 2015

2014
Teaching Information Security with Workflow Technology: A Case Study Approach.
J. Inf. Syst. Educ., 2014

Context-Based Features Enhance Protein Secondary Structure Prediction Accuracy.
J. Chem. Inf. Model., 2014

Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features.
BMC Bioinform., 2014

An implementation of block conjugate gradient algorithm on CPU-GPU processors.
Proceedings of the 1st International Workshop on Hardware-Software Co-Design for High Performance Computing, 2014

2013
Convergence Analysis of Markov Chain Monte Carlo Linear Solvers Using Ulam-von Neumann Algorithm.
SIAM J. Numer. Anal., 2013

High-dimensional MRI data analysis using a large-scale manifold learning approach.
Mach. Vis. Appl., 2013

Building a Knowledge-Based Statistical Potential by Capturing High-Order Inter-residue Interactions and its Applications in Protein Secondary Structure Assessment.
J. Chem. Inf. Model., 2013

Dinosolve: a protein disulfide bonding prediction server using context-based features to enhance prediction accuracy.
BMC Bioinform., 2013

Template-based prediction of protein 8-state secondary structures.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

An improved statistics-based backbone torsion potential energy for protein loop structure modeling.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012
Reusing Random Walks in Monte Carlo Methods for Linear Systems.
Proceedings of the International Conference on Computational Science, 2012

Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units.
J. Parallel Distributed Comput., 2012

MOMCMC: An efficient Monte Carlo method for multi-objective sampling over real parameter space.
Comput. Math. Appl., 2012

2011
DEMCMC-GPU: An Efficient Multi-Objective Optimization Method with GPU Acceleration on the Fermi Architecture.
New Gener. Comput., 2011

Sampling Multiple Scoring Functions Can Improve Protein Loop Structure Prediction Accuracy.
J. Chem. Inf. Model., 2011

A Large-Scale Manifold Learning Approach for Brain Tumor Progression Prediction.
Proceedings of the Machine Learning in Medical Imaging - Second International Workshop, 2011

2010
GPU-accelerated multi-scoring functions protein loop structure sampling.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space.
Proceedings of the 2nd Workshop on Bio-Inspired Algorithms for Distributed Systems, 2010

Integrating multiple scoring functions to improve protein loop structure conformation space sampling.
Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010

Study of Computing Consolidation Techniques in Computational Protein Loop Structure Modeling.
Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010

2009
A decentralized parallel implementation for parallel tempering algorithm.
Parallel Comput., 2009

Hybrid parallel tempering and simulated annealing method.
Appl. Math. Comput., 2009

Resource-efficient computing paradigm for computational protein modeling applications.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Minkowski Functionals Study of Random Number Sequences.
Proceedings of the Computational Science, 2009

A Population-Based Approach for Diversified Protein Loop Structure Sampling.
Proceedings of the Computational Science, 2009

2008
Teaching Operating Systems Using Visualization: A Comparative Study.
Proceedings of the Innovative Techniques in Instruction Technology, 2008

An adaptive and trustworthy software testing framework on the grid.
J. Supercomput., 2008

A Sensor Information Framework for Integrating and Orchestrating Distributed Sensor Services.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2008

2007
Trustworthy remote compiling services for grid-based scientific applications.
J. Supercomput., 2007

Efficient Parallel Implementation of Evolutionary Markov Chain Monte Carlo.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Decentralized Replica Exchange Parallel Tempering: An Efficient Implementation of Parallel Tempering Using MPI and SPRNG.
Proceedings of the Computational Science and Its Applications, 2007

Using packet sniffer simulator in the class: experience and evaluation.
Proceedings of the 45th Annual Southeast Regional Conference, 2007

2006
Using Grid Computing for Distributed Software Testing.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications & Conference on Real-Time Computing Systems and Applications, 2006

Large-scale software unit testing on the grid.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

2005
Grid-based Quasi-Monte Carlo Applications.
Monte Carlo Methods Appl., 2005

A Personal Software Process Tool for Eclipse Environment.
Proceedings of the International Conference on Software Engineering Research and Practice, 2005

Secure Remote Compiling Services on the Grid.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2005

Path Planning for Unmanned Vehicles Using Ant Colony Optimization on a Dynamic Voronoi Diagram.
Proceedings of the 2005 International Conference on Artificial Intelligence, 2005

Parallel tempering in Rosetta Practice.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005

2004
A Grid Workflow-based Monte Carlo Simultation Environment.
Neural Parallel Sci. Comput., 2004

Bio-inspired Fault Tolerant and Adaptive System Modeling and Simulation on the Grid.
Proceedings of the 2nd International Conference Computing, 2004

2003
Analysis of Large-Scale Grid-Based Monte Carlo Applications.
Int. J. High Perform. Comput. Appl., 2003

GCIMCA: A Globus and SPRNG Implementation of a Grid-Computing Infrastructure for Monte Carlo Applications.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2003

Computational Infrastructure for Parallel, Distributed, and Grid-Based Monte Carlo Computations.
Proceedings of the Large-Scale Scientific Computing, 4th International Conference, 2003

Grid-based Nonequilibrium Multiple-Time Scale Molecular Dynamics/Brownian Dynamics Simulations of Ligand-Receptor Interactions in Structured Protein Systems.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

Improving Performance via Computational Replication on a Large-Scale Computational Grid.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

2002
Grid-Based Monte Carlo Application.
Proceedings of the Grid Computing, 2002

2001
A Quasi-Monte Carlo Method for Elliptic Boundary Value Problems.
Monte Carlo Methods Appl., 2001


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