Yanshan Wang

Orcid: 0000-0003-4433-7839

According to our database1, Yanshan Wang authored at least 152 papers between 2012 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

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Bibliography

2024
Enhancing post-traumatic stress disorder patient assessment: leveraging natural language processing for research of domain criteria identification using electronic medical records.
BMC Medical Informatics Decis. Mak., December, 2024

Clinical Information Retrieval: A Literature Review.
J. Heal. Informatics Res., June, 2024

A framework for human evaluation of large language models in healthcare derived from literature review.
npj Digit. Medicine, 2024

PRISM: Patient Records Interpretation for Semantic clinical trial Matching system using large language models.
npj Digit. Medicine, 2024

Foundation metrics for evaluating effectiveness of healthcare conversations powered by generative AI.
npj Digit. Medicine, 2024

Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness.
J. Biomed. Informatics, 2024

Extraction of sleep information from clinical notes of Alzheimer's disease patients using natural language processing.
J. Am. Medical Informatics Assoc., 2024

Large language models for biomedicine: foundations, opportunities, challenges, and best practices.
J. Am. Medical Informatics Assoc., 2024

Distilling large language models for matching patients to clinical trials.
J. Am. Medical Informatics Assoc., 2024

A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction.
J. Am. Medical Informatics Assoc., 2024

Mitigating the Risk of Health Inequity Exacerbated by Large Language Models.
CoRR, 2024

CryptoTrain: Fast Secure Training on Encrypted Dataset.
CoRR, 2024

Generative AI Is Not Ready for Clinical Use in Patient Education for Lower Back Pain Patients, Even With Retrieval-Augmented Generation.
CoRR, 2024

SDoH-GPT: Using Large Language Models to Extract Social Determinants of Health (SDoH).
CoRR, 2024

Precision Rehabilitation for Patients Post-Stroke based on Electronic Health Records and Machine Learning.
CoRR, 2024

A Literature Review and Framework for Human Evaluation of Generative Large Language Models in Healthcare.
CoRR, 2024

PRISM: Patient Records Interpretation for Semantic Clinical Trial Matching using Large Language Models.
CoRR, 2024

Emerging Opportunities of Using Large Language Models for Translation Between Drug Molecules and Indications.
CoRR, 2024

Assertion Detection Large Language Model In-context Learning LoRA Fine-tuning.
CoRR, 2024

TrojFSP: Trojan Insertion in Few-shot Prompt Tuning.
Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

CryptoTrain: Fast Secure Training on Encrypted Dataset.
Proceedings of the 1st ACM Workshop on Large AI Systems and Models with Privacy and Safety Analysis, 2024

Message from the Program Chairs; ICHI 2024.
Proceedings of the 12th IEEE International Conference on Healthcare Informatics, 2024

Enhancing Large Language Models for Clinical Decision Support by Incorporating Clinical Practice Guidelines.
Proceedings of the 12th IEEE International Conference on Healthcare Informatics, 2024

Assertion Detection in Clinical Natural Language Processing Using Large Language Models.
Proceedings of the 12th IEEE International Conference on Healthcare Informatics, 2024

RAG-RLRC-LaySum at BioLaySumm: Integrating Retrieval-Augmented Generation and Readability Control for Layman Summarization of Biomedical Texts.
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

2023
Fair patient model: Mitigating bias in the patient representation learned from the electronic health records.
J. Biomed. Informatics, December, 2023

ReDWINE: A clinical datamart with text analytical capabilities to facilitate rehabilitation research.
Int. J. Medical Informatics, September, 2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.
J. Biomed. Informatics, June, 2023

Adopting and expanding ethical principles for generative artificial intelligence from military to healthcare.
npj Digit. Medicine, 2023

TrojFSP: Trojan Insertion in Few-shot Prompt Tuning.
CoRR, 2023

In-Context Learning Functions with Varying Number of Minima.
CoRR, 2023

Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness.
CoRR, 2023

Foundation Metrics: Quantifying Effectiveness of Healthcare Conversations powered by Generative AI.
CoRR, 2023

An Empirical Evaluation of Prompting Strategies for Large Language Models in Zero-Shot Clinical Natural Language Processing.
CoRR, 2023

Large Language Models Vote: Prompting for Rare Disease Identification.
CoRR, 2023

From Military to Healthcare: Adopting and Expanding Ethical Principles for Generative Artificial Intelligence.
CoRR, 2023

Extracting Physical Rehabilitation Exercise Information from Clinical Notes: a Comparison of Rule-Based and Machine Learning Natural Language Processing Techniques.
CoRR, 2023

Evaluation of Healthprompt for Zero-shot Clinical Text Classification.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Feasibility of Categorizing Rehabilitation Gestures for Automated Fidelity Assessment on Strategy Training using Deep Learning.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Identifying Major Depressive Disorder From Clinical Notes Using Neural Language Models with Distant Supervision.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses.
Proceedings of the Findings of the Association for Computational Linguistics: ACL 2023, 2023

2022
Computational drug repurposing based on electronic health records: a scoping review.
npj Digit. Medicine, 2022

Classifying the lifestyle status for Alzheimer's disease from clinical notes using deep learning with weak supervision.
BMC Medical Informatics Decis. Mak., 2022

Automated Fidelity Assessment for Strategy Training in Inpatient Rehabilitation using Natural Language Processing.
CoRR, 2022

Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models.
CoRR, 2022

Few-Shot Learning for Clinical Natural Language Processing Using Siamese Neural Networks.
CoRR, 2022

Extraction of Sleep Information from Clinical Notes of Alzheimer's Disease Patients Using Natural Language Processing.
CoRR, 2022

Bibliometric Analysis of Pediatric Massage Based on CNKI.
Proceedings of the IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology, 2022

Graph-Augmented Cyclic Learning Framework for Similarity Estimation of Medical Clinical Notes.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

EchoGen: Generating Conclusions from Echocardiogram Notes.
Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

A Novel Zero-shot Learning Framework for Clinical Text Classification.
Proceedings of the AMIA 2022, 2022

HealthPrompt: A zero-shot learning paradigm for Clinical Natural Language Processing.
Proceedings of the AMIA 2022, 2022

A Pilot Study of Automated Approaches to Translate Health Illiterate Language.
Proceedings of the AMIA 2022, 2022

2021
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.
J. Biomed. Informatics, 2021

Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.
J. Am. Medical Informatics Assoc., 2021

Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes.
CoRR, 2021

Social determinants of health in the era of artificial intelligence with electronic health records: A systematic review.
CoRR, 2021

Extracting Lifestyle Factors for Alzheimer's Disease from Clinical Notes Using Deep Learning with Weak Supervision.
CoRR, 2021

Prediction of Incident Dementia Using Patient Temporal Health Status.
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Detecting Major Depressive Disorder from Clinical Notes using Neural Language Models with Distant Supervision.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

COVID-19 Dashboard: Visual Exploration of the Regional Pandemic Trend.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
MedSTS: a resource for clinical semantic textual similarity.
Lang. Resour. Evaluation, 2020

Unsupervised machine learning for the discovery of latent disease clusters and patient subgroups using electronic health records.
J. Biomed. Informatics, 2020

Clinical concept extraction: A methodology review.
J. Biomed. Informatics, 2020

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.
J. Am. Medical Informatics Assoc., 2020

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.
J. Am. Medical Informatics Assoc., 2020

A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data.
Proceedings of the ACM WSDM 2020 Health Search and Data Mining Workshop, 2020

Natural Language Processing Methods to Extract Lifestyle Exposures for Alzheimer's Disease from Clinical Notes.
Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020

A Qualitative Evaluation of Language Models on Automatic Question-Answering for COVID-19.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

Big Impact from Small Data: Unsupervised Machine Learning Approaches for Chronic Pain Patient Subgrouping.
Proceedings of the AMIA 2020, 2020

Annotating Chronic Pain Episodes in EHR Text: Guideline Development and Corpus Analysis.
Proceedings of the AMIA 2020, 2020

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model.
Proceedings of the AMIA 2020, 2020

2019
Selected articles from the BioCreative/OHNLP challenge 2018.
BMC Medical Informatics Decis. Mak., December, 2019

Editorial: The second international workshop on health natural language processing (HealthNLP 2019).
BMC Medical Informatics Decis. Mak., 2019

Discovering associations between problem list and practice setting.
BMC Medical Informatics Decis. Mak., 2019

A clinical text classification paradigm using weak supervision and deep representation.
BMC Medical Informatics Decis. Mak., 2019

Natural language processing of radiology reports for identification of skeletal site-specific fractures.
BMC Medical Informatics Decis. Mak., 2019

Natural language processing for populating lung cancer clinical research data.
BMC Medical Informatics Decis. Mak., 2019

Special issue of BMC medical informatics and decision making on health natural language processing.
BMC Medical Informatics Decis. Mak., 2019

Rare disease knowledge enrichment through a data-driven approach.
BMC Medical Informatics Decis. Mak., 2019

Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients.
J. Heal. Informatics Res., 2019

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.
J. Biomed. Informatics, 2019

Automatic extraction and assessment of lifestyle exposures for Alzheimer's disease using natural language processing.
Int. J. Medical Informatics, 2019

Development of Clinical Concept Extraction Applications: A Methodology Review.
CoRR, 2019

How Good is Artificial Intelligence at Automatically Answering Consumer Questions Related to Alzheimer's Disease?
CoRR, 2019

Unsupervised Machine Learning for the Discovery of Latent Disease Clusters and Patient Subgroups Using Electronic Health Records.
CoRR, 2019

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model.
CoRR, 2019

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
Database J. Biol. Databases Curation, 2019

Research on Virtual Machine Load Balancing Based on Improved Particle Swarm Optimization.
Proceedings of the IEEE Symposium Series on Computational Intelligence, 2019

Research on Load Recognition Algorithms Based on Current Distortion and Harmonic Content.
Proceedings of the IEEE Symposium Series on Computational Intelligence, 2019

Applications of Natural Language Processing in Clinical Research and Practice.
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Information Extraction for Populating Lung Cancer Clinical Research Data.
Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

Integrating word embedding neural networks with PubMed abstracts to extract keyword proximity of chronic diseases.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

Summarization of Patient Education Material for New Media Platform.
Proceedings of the AMIA 2019, 2019

Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records.
Proceedings of the AMIA 2019, 2019

Trajectories of Functional Status of Cognitively-impaired Patients in EHRs.
Proceedings of the AMIA 2019, 2019

2018
Clinical information extraction applications: A literature review.
J. Biomed. Informatics, 2018

A comparison of word embeddings for the biomedical natural language processing.
J. Biomed. Informatics, 2018

Clinical documentation variations and NLP system portability: a case study in asthma birth cohorts across institutions.
J. Am. Medical Informatics Assoc., 2018

A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction.
CoRR, 2018

Extracting chemical-protein relations using attention-based neural networks.
Database J. Biol. Databases Curation, 2018

MayoNLPTeam at the TREC 2018 Precision Medicine Track: Simple Information Retrieval Approach Is the Best.
Proceedings of the Twenty-Seventh Text REtrieval Conference, 2018

A Comparison of Lifestyle Interventions for Alzheimer's Disease Extracted from Clinical Notes and Literature.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Predicting Practice Setting Using Topic Modeling.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Automatic Extraction of Major Osteoporotic Fractures from Radiology Reports using Natural Language Processing.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

BioCreative/OHNLP Challenge 2018.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

EMIRS: An Electronic Medical Information Retrieval System by Leveraging both Structured and Unstructured Electronic Health Records.
Proceedings of the AMIA 2018, 2018

Information Extraction for Data Population in Lung Cancer Clinical Research.
Proceedings of the AMIA 2018, 2018

2017
Intrainstitutional EHR collections for patient-level information retrieval.
J. Assoc. Inf. Sci. Technol., 2017

Generalized ensemble model for document ranking in information retrieval.
Comput. Sci. Inf. Syst., 2017

Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts.
Database J. Biol. Databases Curation, 2017

Leveraging both Structured and Unstructured Data for Precision Information Retrieval.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

Aligned-Layer Text Search in Clinical Notes.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

On Mapping Textual Queries to a Common Data Model.
Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017

Content Analysis of Free-Text Family History.
Proceedings of the Summit on Clinical Research Informatics, 2017

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

Recommending education materials for diabetic questions using information retrieval approaches.
Proceedings of the AMIA 2017, 2017

Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles.
Proceedings of the AMIA 2017, 2017

Accelerating Rare Disease Diagnosis with Collaborative Filtering.
Proceedings of the AMIA 2017, 2017

Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis.
Proceedings of the AMIA 2017, 2017

A Resource for Clinical Semantic Textual Similarity.
Proceedings of the AMIA 2017, 2017

2016
A Part-Of-Speech term weighting scheme for biomedical information retrieval.
J. Biomed. Informatics, 2016

Indexing by Latent Dirichlet Allocation and an Ensemble Model.
J. Assoc. Inf. Sci. Technol., 2016

MatLM: a Matrix Formulation for Probabilistic Language Models.
CoRR, 2016

An Ensemble Model of Clinical Information Extraction and Information Retrieval for Clinical Decision Support.
Proceedings of The Twenty-Fifth Text REtrieval Conference, 2016

MayoNLP at SemEval-2016 Task 1: Semantic Textual Similarity based on Lexical Semantic Net and Deep Learning Semantic Model.
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

POS-MRF: A Part-Of-Speech Weighted Markov Random Field Model for Clinical Information Retrieval.
Proceedings of the Summit on Clinical Research Informatics, 2016

Exploring Gaps of Family History Documentation in EHR for Precision Medicine - A Case Study of Familial Hypercholesterolemia Ascertainment.
Proceedings of the Summit on Clinical Research Informatics, 2016

MayoNLPTeam at the 2016 CLEF eHealth Information Retrieval Task 1.
Proceedings of the Working Notes of CLEF 2016, 2016

MayoBMI at ImageCLEF 2016 Handwritten Document Retrieval Task.
Proceedings of the Working Notes of CLEF 2016, 2016

Answering diabetic patients' questions using expert-vetted online resources: A case study.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Answering patients' questions using expert-vetted online resources: A case study of diabetes.
Proceedings of the AMIA 2016, 2016

Probabilistic Population-level Modeling of Disease Event Timelines.
Proceedings of the AMIA 2016, 2016

A Part-Of-Speech Weighting Scheme for Clinical Information Retrieval.
Proceedings of the AMIA 2016, 2016

Asthma Ascertainment NLP System Portability across Institutions.
Proceedings of the AMIA 2016, 2016

Drug-drug Interaction Detection with A Topic-modeling Based Framework Augmented with Distant-supervision.
Proceedings of the AMIA 2016, 2016

A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text.
Proceedings of the AMIA 2016, 2016

2015
Generalized Ensemble Model for Document Ranking.
CoRR, 2015

Retrieval of Semantically Similar Healthcare Questions in Healthcare Forums.
Proceedings of the 2015 International Conference on Healthcare Informatics, 2015

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
Stock price direction prediction by directly using prices data: an empirical study on the KOSPI and HSI.
Int. J. Bus. Intell. Data Min., 2014

2013
Indexing by Latent Dirichlet Allocation.
CoRR, 2013

Market Index and Stock Price Direction Prediction using Machine Learning Techniques: An empirical study on the KOSPI and HSI.
CoRR, 2013

A novel soft keyboard for touchscreen phones: QWERT.
CoRR, 2013

2012
A Text Classification Method based on Latent Topics.
Proceedings of the ICORES 2012, 2012


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