Yann Ponty
Orcid: 0000-0002-7615-3930Affiliations:
- École Polytechnique, Palaiseau, France
- University of Paris-Sud, Laboratory for Computer Science (LRI), France (former)
According to our database1,
Yann Ponty
authored at least 68 papers
between 2004 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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Bibliography
2024
Algorithms Mol. Biol., December, 2024
RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs.
Proceedings of the 24th International Workshop on Algorithms in Bioinformatics, 2024
Proceedings of the 24th International Workshop on Algorithms in Bioinformatics, 2024
Color Coding for the Fragment-Based Docking, Design and Equilibrium Statistics of Protein-Binding ssRNAs.
Proceedings of the Research in Computational Molecular Biology, 2024
2023
Algorithms Mol. Biol., December, 2023
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique.
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023
2022
Dagstuhl Reports, September, 2022
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.
BMC Bioinform., 2022
Algorithms Mol. Biol., 2022
2021
Bioinform., 2021
A New Parametrization for Independent Set Reconfiguration and Applications to RNA Kinetics.
Proceedings of the 16th International Symposium on Parameterized and Exact Computation, 2021
Proceedings of the Computing and Combinatorics - 27th International Conference, 2021
2020
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.
Bioinform., 2020
HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments.
Bioinform., 2020
Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser.
Bioinform., 2020
Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification.
Proceedings of the Research in Computational Molecular Biology, 2020
Ensemble Algorithms and Analytic Combinatorics in RNA Bioinformatics and Beyond. (Algorithmes ensemblistes et combinatoire analytique en Bioinformatique des ARN).
, 2020
2019
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models.
CoRR, 2019
BMC Bioinform., 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
Proceedings of the 2019 International Conference on 3D Vision, 2019
2018
Int. J. Found. Comput. Sci., 2018
Briefings Bioinform., 2018
2017
Electron. Notes Discret. Math., 2017
Bioinform., 2017
Briefings Bioinform., 2017
Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models.
Algorithmica, 2017
2016
Nucleic Acids Res., 2016
Bioinform., 2016
Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016
2015
BMC Bioinform., December, 2015
CoRR, 2015
Assessing the Robustness of Parsimonious Predictions for Gene Neighborhoods from Reconciled Phylogenies: Supplementary Material.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015
Proceedings of the Combinatorial Pattern Matching - 26th Annual Symposium, 2015
2013
Theor. Comput. Sci., 2013
Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information.
PLoS Comput. Biol., 2013
Nucleic Acids Res., 2013
Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs.
J. Comput. Biol., 2013
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Bioinform., 2013
Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches.
Proceedings of the Research in Computational Molecular Biology, 2013
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs.
Proceedings of the Research in Computational Molecular Biology, 2013
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
CoRR, 2012
Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots.
CoRR, 2012
Rule-weighted and terminal-weighted context-free grammars have identical expressivity
CoRR, 2012
Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract).
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Proceedings of the Combinatorial Pattern Matching - 23rd Annual Symposium, 2012
Proceedings of the 9th Meeting on Analytic Algorithmics and Combinatorics, 2012
2011
An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes Under Evolutionary Pressure.
J. Comput. Biol., 2011
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011
2010
Theor. Comput. Sci., 2010
Weighted random generation of context-free languages: Analysis of collisions in random urn occupancy models
CoRR, 2010
2009
Bioinform., 2009
2008
2007
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Nucleic Acids Res., 2007
2006
Modélisation de séquences génomiques structurées, génération aléatoire et applications. (Models for structured genomic sequences, random generation and applications).
PhD thesis, 2006
Bioinform., 2006
2004
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004