Yanbin Yin

Orcid: 0000-0001-7667-881X

According to our database1, Yanbin Yin authored at least 39 papers between 2004 and 2024.

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Bibliography

2024
A Dual-Modality Complex-Valued Fusion Method for Predicting Side Effects of Drug-Drug Interactions Based on Graph Neural Network.
IEEE J. Biomed. Health Informatics, October, 2024

BERMAD: batch effect removal for single-cell RNA-seq data using a multi-layer adaptation autoencoder with dual-channel framework.
Bioinform., March, 2024

Neuron-based Personality Trait Induction in Large Language Models.
CoRR, 2024

AVBAE-MODFR: A novel deep learning framework of embedding and feature selection on multi-omics data for pan-cancer classification.
Comput. Biol. Medicine, 2024

2023
Semantic-guided graph neural network for heterogeneous graph embedding.
Expert Syst. Appl., December, 2023

scMHNN: a novel hypergraph neural network for integrative analysis of single-cell epigenomic, transcriptomic and proteomic data.
Briefings Bioinform., September, 2023

dbCAN3: automated carbohydrate-active enzyme and substrate annotation.
Nucleic Acids Res., July, 2023

Genome mining for anti-CRISPR operons using machine learning.
Bioinform., May, 2023

dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes.
Nucleic Acids Res., January, 2023

A Matrix Ensemble Kalman Filter-based Multi-arm Neural Network to Adequately Approximate Deep Neural Networks.
CoRR, 2023

Unsupervised Feature Selection by Fusing Spectral Clustering and Locality Preserving Projection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Hierarchical Semantic Augmentation Graph Neural Network for Drug-Disease Association Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
HDMC: a novel deep learning-based framework for removing batch effects in single-cell RNA-seq data.
Bioinform., 2022

MGEGFP: a multi-view graph embedding method for gene function prediction based on adaptive estimation with GCN.
Briefings Bioinform., 2022

Critical assessment of pan-genomic analysis of metagenome-assembled genomes.
Briefings Bioinform., 2022

LR-GNN: a graph neural network based on link representation for predicting molecular associations.
Briefings Bioinform., 2022

Mutual Information Estimation-Based Disentangled Representation Network for Medical Image Fusion.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses.
Nucleic Acids Res., 2021

dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates.
Nucleic Acids Res., 2021

A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations.
BMC Bioinform., 2021

Adversarial Dual-Channel Variational Graph Autoencoder for Synthetic Lethality Prediction in Human Cancers.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Predicting lncRNA-protein interactions based on graph autoencoders and collaborative training.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses.
Nucleic Acids Res., 2020

eCAMI: simultaneous classification and motif identification for enzyme annotation.
Bioinform., 2020

GDASC: a GPU parallel-based web server for detecting hidden batch factors.
Bioinform., 2020

Bayesian Multi-scale Convolutional Neural Network for Motif Occupancy Identification.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Antimicrobial peptide identification using multi-scale convolutional network.
BMC Bioinform., 2019

Genetic Algorithm Based Optimization Method of Single Frequency Network Planning for DTMB.
Proceedings of the 2019 IEEE International Symposium on Broadband Multimedia Systems and Broadcasting, 2019

2018
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation.
Nucleic Acids Res., 2018

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation.
Nucleic Acids Res., 2018

2016
Symmetry analysis and reductions of the two-dimensional generalized Benney system via geometric approach.
Comput. Math. Appl., 2016

ORFanFinder: automated identification of taxonomically restricted orphan genes.
Bioinform., 2016

2014
PlantCAZyme: a database for plant carbohydrate-active enzymes.
Database J. Biol. Databases Curation, 2014

2013
An integrated toolkit for accurate prediction and analysis of <i>cis-</i>regulatory motifs at a genome scale.
Bioinform., 2013

2012
dbCAN: a web resource for automated carbohydrate-active enzyme annotation.
Nucleic Acids Res., 2012

2011
Measurement and prediction of DTMB reception quality in single frequency networks.
Proceedings of the 7th International Wireless Communications and Mobile Computing Conference, 2011

2010
GolgiP: prediction of Golgi-resident proteins in plants.
Bioinform., 2010

2005
SPD - a web-based secreted protein database.
Nucleic Acids Res., 2005

2004
A Study of Gridifying Scientific Computing Legacy Codes.
Proceedings of the Grid and Cooperative Computing, 2004


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