Yan W. Asmann

According to our database, Yan W. Asmann authored at least 11 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model.

Xue Wang, Vivekananda Sarangi, Daniel P. Wickland, Shaoyu Li, Duan Chen, E. Aubrey Thompson, Garrett Jenkinson, Yan W. Asmann

Expert Syst. Appl., 2025

2022

Assessment and Optimization of Explainable Machine Learning Models Applied to Transcriptomic Data.

Yongbing Zhao, Jinfeng Shao, Yan W. Asmann

Genom. Proteom. Bioinform., October, 2022

2020

Somatic selection distinguishes oncogenes and tumor suppressor genes.

Pramod Chandrashekar, Navid Ahmadinejad, Junwen Wang, Aleksandar Sekulic, Jan B. Egan, Yan W. Asmann, Sudhir Kumar, Carlo Maley, Li Liu

Bioinform., 2020

2019

NucMap: a database of genome-wide nucleosome positioning map across species.

Yongbing Zhao, Jinyue Wang, Fang Liang, Yanxia Liu, Qi Wang, Hao Zhang, Meiye Jiang, Zhewen Zhang, Wenming Zhao, Yiming Bao, Zhang Zhang, Jiayan Wu, Yan W. Asmann, Rujiao Li, Jing-Fa Xiao

Nucleic Acids Res., 2019

2018

Identification of missing variants by combining multiple analytic pipelines.

Yingxue Ren, Joseph S. Reddy, Cyril Pottier, Vivekananda Sarangi, Shulan Tian, Jason P. Sinnwell, Shannon K. McDonnell, Joanna M. Biernacka, Minerva M. Carrasquillo, Owen A. Ross, Nilüfer Ertekin-Taner, Rosa Rademakers, Matthew Hudson, Liudmila Sergeevna Mainzer, Yan W. Asmann

BMC Bioinform., 2018

2014

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.

Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher

BMC Bioinform., 2014

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.

Chen Wang, Jared Evans, Aditya Bhagwate, Naresh Prodduturi, Vivekananda Sarangi, Mridu Middha, Hugues Sicotte, Peter T. Vedell, Steven N. Hart, Gavin R. Oliver, Jean-Pierre A. Kocher, Matthew J. Maurer, Anne J. Novak, Susan L. Slager, James R. Cerhan, Yan W. Asmann

Bioinform., 2014

RVboost: RNA-seq variants prioritization using a boosting method.

Chen Wang, Jaime I. Dávila, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann

Bioinform., 2014

2012

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Zhifu Sun, Saurabh Baheti, Sumit Middha, Rahul Kanwar, Yuji Zhang, Xing Li, Andreas S. Beutler, Eric W. Klee, Yan W. Asmann, E. Aubrey Thompson, Jean-Pierre A. Kocher

Bioinform., 2012

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher

Bioinform., 2012

2009

GLOSSI: a method to assess the association of genetic loci-sets with complex diseases.

High-Seng Chai, Hugues Sicotte, Kent R. Bailey, Stephen T. Turner, Yan W. Asmann, Jean-Pierre A. Kocher

BMC Bioinform., 2009