Yan Cui

According to our database, Yan Cui authored at least 28 papers between 1998 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2019

Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks.

Rahul Kumar Sevakula, Vikas Singh, Nishchal K. Verma, Chandan Kumar, Yan Cui

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Feature Ranking using Robust Fuzzy Score Function for Gene Expression Data.

Vikas Singh, Teena Sharma, Nishchal K. Verma, Yan Cui

Proceedings of the 2019 IEEE International Conference on Fuzzy Systems, 2019

2018

Optimal Feature Selection using Fuzzy Combination of Feature Subset for Transcriptome Data.

Vikas Singh, Harsh Vardhan, Nishchal K. Verma, Yan Cui

Proceedings of the 2018 IEEE International Conference on Fuzzy Systems, 2018

2017

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017.

Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai

BMC Bioinform., September, 2017

Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences.

Anindya Bhattacharya, Yan Cui

J. Integr. Bioinform., 2017

2016

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016.

Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains

BMC Bioinform., August, 2016

SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.

Anindya Bhattacharya, Yan Cui

Nucleic Acids Res., 2016

Assessing the quality of biclusters using fuzzy biclustering index.

Nishchal K. Verma, Esha Dutta, Yan Cui

Int. J. Data Min. Bioinform., 2016

Layerwise feature selection in Stacked Sparse Auto-Encoder for tumor type prediction.

Vikas Singh, Nikhil Baranwal, Rahul Kumar Sevakula, Nishchal K. Verma, Yan Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

miR2GO: comparative functional analysis for microRNAs.

Anindya Bhattacharya, Yan Cui

Bioinform., 2015

Hausdorff distance and global silhouette index as novel measures for estimating quality of biclusters.

Nishchal K. Verma, Esha Dutta, Yan Cui

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways.

Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui

Nucleic Acids Res., 2014

2013

CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.

Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui

Nucleic Acids Res., 2013

SomamiR: a database for somatic mutations impacting microRNA function in cancer.

Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui

Nucleic Acids Res., 2013

Bayesian Network Webserver: a comprehensive tool for biological network modeling.

Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui

Bioinform., 2013

2012

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits.

Jesse D. Ziebarth, Anindya Bhattacharya, Anlong Chen, Yan Cui

Nucleic Acids Res., 2012

2010

Linking genotype to phenotype with Bayesian network modeling of <i>Chlamydia</i> infection.

Jesse D. Ziebarth, Bao Li, Isao Miyairi, Yan Cui

BMC Bioinform., 2010

2009

Fuzzy rule based unsupervised approach for gene saliency.

Nishchal K. Verma, Pooja Agrawal, Yan Cui

BMC Bioinform., 2009

Medical Image Segmentation Using Improved Mountain Clustering Approach.

Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Madasu Hanmandlu, Shantaram Vasikarla, Yan Cui

Proceedings of the Sixth International Conference on Information Technology: New Generations, 2009

Fuzzy rule based unsupervised approach for salient gene extraction.

Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui

Proceedings of the 2009 IEEE Applied Imagery Pattern Recognition Workshop, 2009

MRI brain image segmentation for spotting tumors using improved mountain clustering approach.

Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui

Proceedings of the 2009 IEEE Applied Imagery Pattern Recognition Workshop, 2009

2008

CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators.

Lei Bao, Mi Zhou, Yan Cui

Nucleic Acids Res., 2008

2007

PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits.

Lei Bao, Mi Zhou, Ligang Wu, Lu Lu, Dan Goldowitz, Robert W. Williams, Yan Cui

Nucleic Acids Res., 2007

2005

nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms.

Lei Bao, Mi Zhou, Yan Cui

Nucleic Acids Res., 2005

Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.

Lei Bao, Yan Cui

Bioinform., 2005

2004

GeneInfoViz: Constructing and visualizing gene relation networks.

Mi Zhou, Yan Cui

Silico Biol., 2004

Ranking Gene Regulatory Network Models with Microarray Data and Bayesian Network.

Hongqiang Li, Mi Zhou, Yan Cui

Proceedings of the Data Mining and Knowledge Management, 2004

1998

Torsional Relaxation for Biopolymers.

Wing Hung Wong, Yan Cui, Run Sheng Chen

J. Comput. Biol., 1998