PresRecST: a novel herbal prescription recommendation algorithm for real-world patients with integration of syndrome differentiation and treatment planning.

[BibT_eX]

[DOI]

Xin Dong

Chenxi Zhao

J. Am. Medical Informatics Assoc., 2024

Deep representation learning from electronic medical records identifies distinct symptom based subtypes and progression patterns for COVID-19 prognosis.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2024

ISPO: An Integrated Ontology of Symptom Phenotypes for Semantic Integration of Traditional Chinese Medical Data.

[BibT_eX]

[DOI]

CoRR, 2024

TCM-FTP: Fine-Tuning Large Language Models for Herbal Prescription Prediction.

[BibT_eX]

[DOI]

CoRR, 2024

KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition.

[BibT_eX]

[DOI]

Briefings Bioinform., 2024

Dynamic Feature Fusion Based on Consistency and Complementarity of Brain Atlases.

[BibT_eX]

[DOI]

Proceedings of the Pattern Recognition and Computer Vision - 7th Chinese Conference, 2024

Benchmarking Biomedical Relation Knowledge in Large Language Models.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

2023

DRONet: effectiveness-driven drug repositioning framework using network embedding and ranking learning.

[BibT_eX]

[DOI]

Briefings Bioinform., January, 2023

SympGAN: A systematic knowledge integration system for symptom-gene associations network.

[BibT_eX]

[DOI]

Knowl. Based Syst., 2023

A optimization framework for herbal prescription planning based on deep reinforcement learning.

[BibT_eX]

[DOI]

CoRR, 2023

Knowledge Graph Completion based on Tensor Decomposition for Disease Gene Prediction.

[BibT_eX]

[DOI]

CoRR, 2023

A Pre-training Framework for Knowledge Graph Completion.

[BibT_eX]

[DOI]

CoRR, 2023

Classification Characteristics of COPD Based on Combination of Disease and Syndrome in Real World.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View Features.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Link Prediction based on Tensor Decomposition for the Knowledge Graph of COVID-19 Antiviral Drug.

[BibT_eX]

[DOI]

Data Intell., 2022

TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine.

[BibT_eX]

[DOI]

Briefings Bioinform., 2022

A Chemical Domain Knowledge-Aware Framework for Multi-view Molecular Property Prediction.

[BibT_eX]

[DOI]

Proceedings of the CCKS 2022 - Evaluation Track, 2022

RESurv: A Deep Survival Analysis Model to Reveal Population Heterogeneity by Individual Risk.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Research and Implementation of Real World Traditional Chinese Medicine Clinical Scientific Research Information Electronic Medical Record Sharing System.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Phenonizer: A fine-grained phenotypic named entity recognizer for Chinese clinical texts.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

COX-2 as the key target of LianXia NingXin Formula for treating Sympathetic Remodeling after Myocardial Infarction: pharmacological network prediction with experimental validation.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

TCMPR: TCM Prescription recommendation based on subnetwork term mapping and deep learning.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Integrated network analysis of symptom clusters across disease conditions.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2020

Disease phenotype synonymous prediction through network representation learning from PubMed database.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2020

Network-based gene prediction for TCM symptoms.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Analysis of diabetic comorbidities and their interrelationships in 5227 Chinese patients with type 2 diabetes.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2019

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2019

Symptom-based network classification identifies distinct clinical subgroups of liver diseases with common molecular pathways.

[BibT_eX]

[DOI]

Comput. Methods Programs Biomed., 2019

A Clustering Based Transfer Function for Volume Rendering Using Gray-Gradient Mode Histogram.

[BibT_eX]

[DOI]

IEEE Access, 2019

2018

Heterogeneous network propagation for herb target identification.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2018

Heterogeneous network embedding for identifying symptom candidate genes.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Analysis of Disease Comorbidity Patterns in a Large-Scale China Population.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Theories and Application, 2018

Discovery of Xuantoujiedu Decoction and its Molecular Mechanisms Using Integrated Network Analysis.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

An analysis of human microbe-disease associations.

[BibT_eX]

[DOI]

Briefings Bioinform., 2017

Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-Factorization.

[BibT_eX]

[DOI]

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

HEMnet: Integration of Electronic Medical Records with Molecular Interaction Networks and Domain Knowledge for Survival Analysis.

[BibT_eX]

[DOI]

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

Framing Electronic Medical Records as Polylingual Documents in Query Expansion.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

2016

Extracting relations from traditional Chinese medicine literature via heterogeneous entity networks.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

A conditional probabilistic model for joint analysis of symptoms, diseases, and herbs in traditional Chinese medicine patient records.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Similarity-based algorithms for Disease Terminology Mapping.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

PaReCat: Patient Record Subcategorization for Precision Traditional Chinese Medicine.

[BibT_eX]

[DOI]

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

Integrating herb effect similarity for network-based herb target prediction.

[BibT_eX]

[DOI]

Proceedings of the 8th International Conference on Biomedical Engineering and Informatics, 2015

2014

Regularity of herbal formulae for HIV/AIDS patients with syndromes based on complex networks.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE Symposium on Computational Intelligence in Big Data, 2014

Methods and technologies of traditional Chinese medicine clinical information datamation in real world.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE Symposium on Computational Intelligence in Big Data, 2014

Development of large-scale TCM corpus using hybrid named entity recognition methods for clinical phenotype detection: An initial study.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE Symposium on Computational Intelligence in Big Data, 2014

2013

Modelling traditional Chinese medicine therapy planning with POMDP.

[BibT_eX]

[DOI]

Int. J. Funct. Informatics Pers. Medicine, 2013

Frequent itemsets compressing based on minimum cover: An efficient method for mining medication law of Chinese herbs.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Complex network approach for analyzing TCM clinical herb-symptom relationships.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Integrating phenotype-genotype data for prioritization of candidate symptom genes.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Real-world clinical data mining on TCM clinical diagnosis and treatment: A survey.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Constructing ideas of health service platform for the elderly.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Enhanced data extraction, transforming and loading processing for Traditional Chinese Medicine clinical data warehouse.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Clinical data preprocessing and case studies of POMDP for TCM treatment knowledge discovery.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Using link topic model to analyze traditional Chinese Medicine Clinical symptom-herb regularities.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Multidimensional analysis for Traditional Chinese Medicine diagnosis and treatment on hepatitis diseases.

[BibT_eX]

[DOI]

Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

2011

A novel approach in discovering significant interactions from TCM patient prescription data.

[BibT_eX]

[DOI]

Int. J. Data Min. Bioinform., 2011

Multiscale backbone based network comparison algorithm for effective herbal interaction analysis.

[BibT_eX]

[DOI]

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

Co-evolutionary genetic algorithm in symptom-herb relationship discovery.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Analysis of herbal formulation in TCM: Infertility as a case study.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Text mining for traditional Chinese medical knowledge discovery: A survey.

[BibT_eX]

[DOI]

Xuezhong Zhou

Yonghong Peng

Baoyan Liu

J. Biomed. Informatics, 2010

Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2010

Novel Two-Stage Analytic Approach in Extraction of Strong Herb-Herb Interactions in TCM Clinical Treatment of Insomnia.

[BibT_eX]

[DOI]

Proceedings of the Medical Biometrics, Second International Conference, 2010

Studying herb-herb interaction for insomnia through the theory of complementarities.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Analysis of synergistic and antagonistic effects of TCM: Cases on diabetes and insomnia.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Empirical study on treatment of Coronary Heart Disease with famous doctors' method of regulating spleen and stomach based on simplified point-wise mutual information.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

An Uncertainty-Based Belief Selection Method for POMDP Value Iteration.

[BibT_eX]

[DOI]

Qi Feng