Xiu-Fen Zou

Comput. Math. Appl., 2022

2021

SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data.

[BibT_eX]

[DOI]

Yuanyuan Li

IEEE J. Biomed. Health Informatics, 2021

scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data.

[BibT_eX]

[DOI]

Bo Liu

Fang-Xiang Wu

IEEE J. Biomed. Health Informatics, 2021

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2021

Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria.

[BibT_eX]

[DOI]

Int. J. Bifurc. Chaos, 2021

Influence of the Binomial Crossover on Performance of Randomized Search Heuristics.

[BibT_eX]

[DOI]

CoRR, 2021

2020

Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data.

[BibT_eX]

[DOI]

Jia Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2020

scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data.

[BibT_eX]

[DOI]

Xiao Zheng

Yuan Huang

PLoS Comput. Biol., 2020

Tensor-based mathematical framework and new centralities for temporal multilayer networks.

[BibT_eX]

[DOI]

Wei Yu

Inf. Sci., 2020

2019

Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Integrating network topology, gene expression data and GO annotation information for protein complex prediction.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2019

Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method.

[BibT_eX]

[DOI]

CoRR, 2019

Control of multilayer biological networks and applied to target identification of complex diseases.

[BibT_eX]

[DOI]

Wei Zheng

BMC Bioinform., 2019

2018

Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information".

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems.

[BibT_eX]

[DOI]

Suoqin Jin

SIAM J. Appl. Math., 2018

2017

Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.

[BibT_eX]

[DOI]

Yuewu Liu

PLoS Comput. Biol., 2017

Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis.

[BibT_eX]

[DOI]

Gang Wang

Yuanyuan Li

Comput. Math. Methods Medicine, 2017

Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization.

[BibT_eX]

[DOI]

Dong Chen

Comput. Math. Methods Medicine, 2017

Control Energy and controllability of multilayer Networks.

[BibT_eX]

[DOI]

Adv. Complex Syst., 2017

2016

Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective.

[BibT_eX]

[DOI]

Gang Wang

Int. J. Bifurc. Chaos, 2016

Identifying disease modules and components of viral infections based on multi-layer networks.

[BibT_eX]

[DOI]

Yuanyuan Li

Sci. China Inf. Sci., 2016

Inference of genetic regulatory network for stem cell using single cells expression data.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

A New Method for Detecting Protein Complexes based on the Three Node Cliques.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast.

[BibT_eX]

[DOI]

Wenlong Li

Ming Yi

Quant. Biol., 2015

A binary differential evolution algorithm learning from explored solutions.

[BibT_eX]

[DOI]

Neurocomputing, 2015

Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics.

[BibT_eX]

[DOI]

Int. J. Bifurc. Chaos, 2015

Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method.

[BibT_eX]

[DOI]

CoRR, 2015

Optimal Control Strategy for Abnormal Innate Immune Response.

[BibT_eX]

[DOI]

Jinying Tan

Comput. Math. Methods Medicine, 2015

Estimation of control Energy and control Strategies for Complex Networks.

[BibT_eX]

[DOI]

Adv. Complex Syst., 2015

2014

Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts.

[BibT_eX]

[DOI]

Inf. Sci., 2014

Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Theory - 10th International Conference, 2014

2013

Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

How can surrogates influence the convergence of evolutionary algorithms?

[BibT_eX]

[DOI]

Swarm Evol. Comput., 2013

Diversity-maintained differential evolution embedded with gradient-based local search.

[BibT_eX]

[DOI]

Wei Yu

Soft Comput., 2013

Complex Dynamical Analysis of a Coupled Network from Innate Immune responses.

[BibT_eX]

[DOI]

Jinying Tan

Int. J. Bifurc. Chaos, 2013

A triangulation-based hole patching method using differential evolution.

[BibT_eX]

[DOI]

Wei-Cheng Xie

Xiu-Fen Zou

Comput. Aided Des., 2013

Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization.

[BibT_eX]

[DOI]

Suoqin Jin

BMC Syst. Biol., 2013

2012

Iteration and optimization scheme for the reconstruction of 3D surfaces based on non-uniform rational B-splines.

[BibT_eX]

[DOI]

Comput. Aided Des., 2012

Synchronization ability of coupled cell-cycle oscillators in changing environments.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2012

2011

Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front.

[BibT_eX]

[DOI]

Inf. Sci., 2011

Drift conditions for estimating the first hitting times of evolutionary algorithms.

[BibT_eX]

[DOI]

Jun He

Int. J. Comput. Math., 2011

A Population-Based Hybrid Extremal Optimization Algorithm.

[BibT_eX]

[DOI]

Kai Zhang

Proceedings of the Bio-Inspired Computing and Applications, 2011

2010

The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm.

[BibT_eX]

[DOI]

Proceedings of the Advances in Computation and Intelligence - 5th International Symposium, 2010

2009

A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems.

[BibT_eX]

[DOI]

Rongxiang Yuan

Chunlin Xu

Proceedings of the first ACM/SIGEVO Summit on Genetic and Evolutionary Computation, 2009

Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances.

[BibT_eX]

[DOI]

Proceedings of the IEEE Congress on Evolutionary Computation, 2009

2008

A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems.

[BibT_eX]

[DOI]

IEEE Trans. Syst. Man Cybern. Part B, 2008

Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm.

[BibT_eX]

[DOI]

Minzhong Liu

Zishu Pan

Biosyst., 2008

Optimal coordination of protection relays using new hybrid evolutionary algorithm.

[BibT_eX]

[DOI]

Proceedings of the IEEE Congress on Evolutionary Computation, 2008

A Genetic Algorithm approach for selecting Tikhonov regularization parameter.

[BibT_eX]

[DOI]

Chuansheng Wu

Jinrong He

Proceedings of the IEEE Congress on Evolutionary Computation, 2008

2007

An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space.

[BibT_eX]

[DOI]

Minzhong Liu

Lishan Kang

Proceedings of the Advances in Computation and Intelligence, 2007

A New Evolutionary Decision Theory for Many-Objective Optimization Problems.

[BibT_eX]

[DOI]

Proceedings of the Advances in Computation and Intelligence, 2007

2006

Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm.

[BibT_eX]

[DOI]

Zishu Pan

Proceedings of the Simulated Evolution and Learning, 6th International Conference, 2006

2005

Fast annealing genetic algorithm for multi-objective optimization problems.

[BibT_eX]

[DOI]

Lishan Kang

Int. J. Comput. Math., 2005

2004

A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics.

[BibT_eX]

[DOI]

Proceedings of the Parallel Problem Solving from Nature, 2004

2003

A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics.

[BibT_eX]

[DOI]

J. Comput. Sci. Technol., 2003

An efficient dynamical evolutionary algorithm for global optimization.

[BibT_eX]

[DOI]

Int. J. Comput. Math., 2003

2002

A dynamical evolutionary algorithm for constrained optimization problems.

[BibT_eX]

[DOI]

Lishan Kang

Yuanxiang Li

Proceedings of the 2002 Congress on Evolutionary Computation, 2002

1996

Use of Multi-scalar Analysis for Building Lattice Models of PDE's.

[BibT_eX]

[DOI]

Yuanxiang Li