Xing-Ming Zhao
Orcid: 0000-0002-4531-3970
According to our database1,
Xing-Ming Zhao
authored at least 85 papers
between 2004 and 2024.
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Bibliography
2024
Enhancing Generalized Fetal Brain MRI Segmentation using A Cascade Network with Depth-wise Separable Convolution and Attention Mechanism.
CoRR, 2024
MicroHDF: predicting host phenotypes with metagenomic data using a deep forest-based framework.
Briefings Bioinform., 2024
2023
Improving Alzheimer's Disease Diagnosis With Multi-Modal PET Embedding Features by a 3D Multi-Task MLP-Mixer Neural Network.
IEEE J. Biomed. Health Informatics, August, 2023
Briefings Bioinform., May, 2023
Deciphering the genetic architecture of human brain structure and function: a brief survey on recent advances of neuroimaging genomics.
Briefings Bioinform., March, 2023
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
Bioinform., 2023
Prioritizing genes associated with brain disorders by leveraging enhancer-promoter interactions in diverse neural cells and tissues.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
Bioinform., November, 2022
Co-VAE: Drug-Target Binding Affinity Prediction by Co-Regularized Variational Autoencoders.
IEEE Trans. Pattern Anal. Mach. Intell., 2022
mBodyMap: a curated database for microbes across human body and their associations with health and diseases.
Nucleic Acids Res., 2022
GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison.
Nucleic Acids Res., 2022
Consistent Alterations of Human Fecal Microbes After Transplantation into Germ-free Mice.
Genom. Proteom. Bioinform., 2022
An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.
Briefings Bioinform., 2022
MorbidGCN: prediction of multimorbidity with a graph convolutional network based on integration of population phenotypes and disease network.
Briefings Bioinform., 2022
2021
Identifying Molecular Biomarkers for Diseases With Machine Learning Based on Integrative Omics.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Nucleic Acids Res., 2021
OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.
Nucleic Acids Res., 2021
Bioinform., 2021
PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein-protein interaction information.
Bioinform., 2021
nMAGMA: a network-enhanced method for inferring risk genes from GWAS summary statistics and its application to schizophrenia.
Briefings Bioinform., 2021
2020
Nucleic Acids Res., 2020
Deep convolutional neural network for accurate segmentation and quantification of white matter hyperintensities.
Neurocomputing, 2020
A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks.
Bioinform., 2020
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
Bioinform., 2020
IEEE Access, 2020
2019
IEEE Trans. Cybern., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
Nucleic Acids Res., 2019
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
Bioinform., 2019
Bioinform., 2019
2018
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018
2017
PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Nucleic Acids Res., 2017
OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.
Nucleic Acids Res., 2017
Bioinform., 2017
Proceedings of the 13th IEEE Conference on Automation Science and Engineering, 2017
Proceedings of the 13th IEEE Conference on Automation Science and Engineering, 2017
2016
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
A systematic exploration of the associations between amino acid variants and post-translational modifications.
Neurocomputing, 2016
Sci. China Inf. Sci., 2016
A hybrid sequential feature selection approach for the diagnosis of Alzheimer's Disease.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016
The exploration of functional divergence between human and macaque brains based on gene networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
<i>j</i>NMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data.
Bioinform., 2015
2014
Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication".
PLoS Comput. Biol., 2014
Bioinform., 2014
2013
PLoS Comput. Biol., 2013
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
Bioinform., 2013
Database J. Biol. Databases Curation, 2013
Proceedings of the Pattern Recognition in Bioinformatics, 2013
2012
J. Am. Medical Informatics Assoc., 2012
BMC Bioinform., 2012
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinform., 2012
Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populations.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
PLoS Comput. Biol., 2011
2010
Analysis of Gene Expression Data Using Rpem Algorithm in Normal Mixture Model with Dynamic Adjustment of Learning Rate.
Int. J. Pattern Recognit. Artif. Intell., 2010
BMC Syst. Biol., 2010
FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.
BMC Syst. Biol., 2010
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
BMC Bioinform., 2010
2009
J. Bioinform. Comput. Biol., 2009
Proceedings of the Complex Sciences, 2009
A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009
2008
Protein function prediction with the shortest path in functional linkage graph and boosting.
Int. J. Bioinform. Res. Appl., 2008
Predicting contact map using Radial Basis Function Neural Network with Conformational Energy Function.
Int. J. Bioinform. Res. Appl., 2008
Genom. Proteom. Bioinform., 2008
Proceedings of the Pattern Recognition in Bioinformatics, 2008
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2006
Int. J. Pattern Recognit. Artif. Intell., 2006
Classifying G-Protein Coupled Receptors with Hydropathy Blocks and Support Vector Machines.
Proceedings of the Computational Intelligence and Bioinformatics, 2006
2005
A novel approach to extracting features from motif content and protein composition for protein sequence classification.
Neural Networks, 2005
2004
Proceedings of the Advances in Neural Networks, 2004
Proceedings of the Intelligent Data Engineering and Automated Learning, 2004