Xinben Zhang

According to our database, Xinben Zhang authored at least 10 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

D3Rings: A Fast and Accurate Method for Ring System Identification and Deep Generation of Drug-Like Cyclic Compounds.

Minfei Ma, Xinben Zhang, Liping Zhou, Zijian Han, Yulong Shi, Jintian Li, Leyun Wu, Zhijian Xu, Weiliang Zhu

J. Chem. Inf. Model., 2024

2023

D3CARP: a comprehensive platform with multiple-conformation based docking, ligand similarity search and deep learning approaches for target prediction and virtual screening.

Yulong Shi, Xinben Zhang, Yanqing Yang, Tingting Cai, Cheng Peng, Leyun Wu, Liping Zhou, Jiaxin Han, Minfei Ma, Weiliang Zhu, Zhijian Xu

Comput. Biol. Medicine, September, 2023

2022

D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2.

Jiaxin Han, Tingting Liu, Xinben Zhang, Yanqing Yang, Yulong Shi, Jintian Li, Minfei Ma, Weiliang Zhu, Likun Gong, Zhijian Xu

Comput. Biol. Medicine, 2022

D3PM: a comprehensive database for protein motions ranging from residue to domain.

Cheng Peng, Xinben Zhang, Zhijian Xu, Zhaoqiang Chen, Yanqing Yang, Tingting Cai, Weiliang Zhu

BMC Bioinform., 2022

D3AI-CoV: a deep learning platform for predicting drug targets and for virtual screening against COVID-19.

Yanqing Yang, Deshan Zhou, Xinben Zhang, Yulong Shi, Jiaxin Han, Liping Zhou, Leyun Wu, Minfei Ma, Jintian Li, Shaoliang Peng, Zhijian Xu, Weiliang Zhu

Briefings Bioinform., 2022

2021

D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity.

Xiaoyu Wang, Xinben Zhang, Cheng Peng, Yulong Shi, Huiyu Li, Zhijian Xu, Weiliang Zhu

J. Chem. Inf. Model., 2021

Ligand-based approach for predicting drug targets and for virtual screening against COVID-19.

Yanqing Yang, Zhengdan Zhu, Xiaoyu Wang, Xinben Zhang, Kaijie Mu, Yulong Shi, Cheng Peng, Zhijian Xu, Weiliang Zhu

Briefings Bioinform., 2021

2019

D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics.

Zhaoqiang Chen, Xinben Zhang, Cheng Peng, Jinan Wang, Zhijian Xu, Kaixian Chen, Jiye Shi, Weiliang Zhu

J. Chem. Inf. Model., 2019

2015

mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors.

Qian Cheng, Shaoliang Peng, Yutong Lu, Weiliang Zhu, Zhijian Xu, Xinben Zhang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2013

A seven-core photonic crystal fiber with high beam quality.

Huifeng Wei, Gelin Zhang, Peiguang Yan, Jiang Li, Xinben Zhang, Weijun Tong, Jie Luo, Jinyan Li, Kangkang Chen

Proceedings of the 2013 Optical Fiber Communication Conference and Exposition and the National Fiber Optic Engineers Conference (OFC/NFOEC), 2013