Xiaoqiu Huang

Affiliations:
  • Iowa State University, Ames, USA


According to our database1, Xiaoqiu Huang authored at least 33 papers between 1988 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

2017
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences.
BMC Bioinform., 2017

2011
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

2010
Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

Derived distribution points heuristic for fast pairwise statistical significance estimation.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction.
J. Comput. Biol., 2009

Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty.
BMC Bioinform., 2009

PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
Bioinform., 2009

2008
Sequence Alignment with an Appropriate Substitution Matrix.
J. Comput. Biol., 2008

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.
Int. J. Comput. Biol. Drug Des., 2008

Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition.
Proceedings of the Bioinformatics Research and Applications, 2008

Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences.
Proceedings of the Bioinformatics Research and Applications, 2008

DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio.
Proceedings of the 2008 IEEE International Conference on Electro/Information Technology, 2008

Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance.
Proceedings of the 2008 International Conference on Information Technology, 2008

Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets.
Proceedings of the 2008 International Conference on Information Technology, 2008

Pairwise statistical significance of local sequence alignment using multiple parameter sets.
Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008

Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2005
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage.
BMC Bioinform., 2005

2004
Efficient combination of multiple word models for improved sequence comparison.
Bioinform., 2004

A Sensitive Sequence Comparison Method.
Proceedings of the 4th IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2004), 2004

Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Parallel Syntenic Alignments.
Parallel Process. Lett., 2003

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Bioinform., 2003

MAVG: locating non-overlapping maximum average segments in a given sequence.
Bioinform., 2003

A generalized global alignment algorithm.
Bioinform., 2003

1998
Performance of the CAP2 sequence assembly program.
Proceedings of the Mathematical Support for Molecular Biology, 1998

1994
Parametric Recomuting in Alignment Graphs.
Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

A Context Dependent Method for Comparing Sequences.
Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1992
Parallelization of a local similarity algorithm.
Comput. Appl. Biosci., 1992

1990
A space-efficient algorithm for local similarities.
Comput. Appl. Biosci., 1990

Computing Local Sequence Similarities on a Hypercube.
Proceedings of the 1990 International Conference on Parallel Processing, 1990

1989
A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor.
Int. J. Parallel Program., 1989

1988
A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function.
Inf. Process. Lett., 1988


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