Xiao-Fei Zhang
Orcid: 0000-0002-5052-9725
According to our database1,
Xiao-Fei Zhang
authored at least 44 papers
between 2011 and 2023.
Collaborative distances:
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Bibliography
2023
EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning.
Bioinform., January, 2023
scTSSR2: Imputing Dropout Events for Single-Cell RNA Sequencing Using Fast Two-Side Self-Representation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PLoS Comput. Biol., 2023
2022
Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization.
Bioinform., 2022
scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning.
Briefings Bioinform., 2022
2021
A Joint Graphical Model for Inferring Gene Networks Across Multiple Subpopulations and Data Types.
IEEE Trans. Cybern., 2021
Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
EnTSSR: A Weighted Ensemble Learning Method to Impute Single-Cell RNA Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Differential network analysis by simultaneously considering changes in gene interactions and gene expression.
Bioinform., 2021
WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values.
Briefings Bioinform., 2021
2020
Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate $t$t-Distribution.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Sparse regularized low-rank tensor regression with applications in genomic data analysis.
Pattern Recognit., 2020
A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks.
Bioinform., 2020
Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity.
Bioinform., 2020
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
Bioinform., 2020
2019
IEEE Trans. Cybern., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
Bioinform., 2019
Bioinform., 2019
2018
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
DiffGraph: an R package for identifying gene network rewiring using differential graphical models.
Bioinform., 2018
2017
Localized modes of the (n+1)-dimensional Schrödinger equation with power-law nonlinearities in PT-symmetric potentials.
Commun. Nonlinear Sci. Numer. Simul., 2017
A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
BMC Bioinform., 2017
Incorporating prior information into differential network analysis using non-paranormal graphical models.
Bioinform., 2017
2016
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks.
BMC Bioinform., 2016
Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer.
BMC Bioinform., 2016
BMC Bioinform., 2016
BMC Bioinform., 2016
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
BMC Bioinform., 2015
2014
J. Intell. Fuzzy Syst., 2014
Detecting overlapping protein complexes based on a generative model with functional and topological properties.
BMC Bioinform., 2014
Detecting temporal protein complexes from dynamic protein-protein interaction networks.
BMC Bioinform., 2014
2013
IEEE Trans. Image Process., 2013
Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
2012
Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Biomarker Identification and Cancer Classification Based on Microarray Data Using Laplace Naive Bayes Model with Mean Shrinkage.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
2011
Face recognition with continuous occlusion using partially iteratively reweighted sparse coding.
Proceedings of the First Asian Conference on Pattern Recognition, 2011