Xiangxiang Zeng
Orcid: 0000-0003-1081-7658
According to our database1,
Xiangxiang Zeng
authored at least 198 papers
between 2008 and 2024.
Collaborative distances:
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Bibliography
2024
Learning to Denoise Biomedical Knowledge Graph for Robust Molecular Interaction Prediction.
IEEE Trans. Knowl. Data Eng., December, 2024
A deep learning approach for rational ligand generation with toxicity control via reactive building blocks.
Nat. Comput. Sci., November, 2024
Memristive Circuit Implementation of Caenorhabditis Elegans Mechanism for Neuromorphic Computing.
IEEE Trans. Neural Networks Learn. Syst., September, 2024
On the migrativity properties between uni-nullnorms and overlap (grouping) functions.
Soft Comput., July, 2024
IEEE Trans. Neural Networks Learn. Syst., April, 2024
WalkGAN: Network Representation Learning With Sequence-Based Generative Adversarial Networks.
IEEE Trans. Neural Networks Learn. Syst., April, 2024
IEEE Trans. Evol. Comput., April, 2024
IEEE J. Biomed. Health Informatics, March, 2024
PEB-DDI: A Task-Specific Dual-View Substructural Learning Framework for Drug-Drug Interaction Prediction.
IEEE J. Biomed. Health Informatics, January, 2024
SiSGC: A Drug Repositioning Prediction Model Based on Heterogeneous Simplifying Graph Convolution.
J. Chem. Inf. Model., January, 2024
Theor. Comput. Sci., 2024
scCAN: Clustering With Adaptive Neighbor-Based Imputation Method for Single-Cell RNA-Seq Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2024
Swarm Evol. Comput., 2024
PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites.
PLoS Comput. Biol., 2024
ECD-CDGI: An efficient energy-constrained diffusion model for cancer driver gene identification.
PLoS Comput. Biol., 2024
Glypred: Lysine Glycation Site Prediction via CCU-LightGBM-BiLSTM Framework with Multi-Head Attention Mechanism.
J. Chem. Inf. Model., 2024
J. Chem. Inf. Model., 2024
J. Chem. Inf. Model., 2024
Inf. Sci., 2024
DualSyn: A dual-level feature interaction method to predict synergistic drug combinations.
Expert Syst. Appl., 2024
Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development.
CoRR, 2024
MaskMol: Knowledge-guided Molecular Image Pre-Training Framework for Activity Cliffs.
CoRR, 2024
MoFormer: Multi-objective Antimicrobial Peptide Generation Based on Conditional Transformer Joint Multi-modal Fusion Descriptor.
CoRR, 2024
KGExplainer: Towards Exploring Connected Subgraph Explanations for Knowledge Graph Completion.
CoRR, 2024
Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model.
CoRR, 2024
MSlocPRED: deep transfer learning-based identification of multi-label mRNA subcellular localization.
Briefings Bioinform., 2024
Briefings Bioinform., 2024
SSR-DTA: Substructure-aware multi-layer graph neural networks for drug-target binding affinity prediction.
Artif. Intell. Medicine, 2024
Proceedings of the International Joint Conference on Neural Networks, 2024
Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence, 2024
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024
2023
J. Cheminformatics, December, 2023
A Multi-Population Multi-Objective Evolutionary Algorithm Based on the Contribution of Decision Variables to Objectives for Large-Scale Multi/Many-Objective Optimization.
IEEE Trans. Cybern., November, 2023
A general hypergraph learning algorithm for drug multi-task predictions in micro-to-macro biomedical networks.
PLoS Comput. Biol., November, 2023
Briefings Bioinform., September, 2023
Prediction of multi-relational drug-gene interaction via Dynamic hyperGraph Contrastive Learning.
Briefings Bioinform., September, 2023
Sequence Alignment/Map format: a comprehensive review of approaches and applications.
Briefings Bioinform., September, 2023
Theor. Comput. Sci., August, 2023
IEEE Trans. Knowl. Data Eng., July, 2023
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction.
Briefings Bioinform., July, 2023
Evolutionary Multi-Objective Optimization in Searching for Various Antimicrobial Peptides [Feature].
IEEE Comput. Intell. Mag., May, 2023
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder.
Briefings Bioinform., May, 2023
Monodirectional evolutional symport tissue P systems with channel states and cell division.
Sci. China Inf. Sci., March, 2023
Machine learning on protein-protein interaction prediction: models, challenges and trends.
Briefings Bioinform., March, 2023
Briefings Bioinform., January, 2023
DSN-DDI: an accurate and generalized framework for drug-drug interaction prediction by dual-view representation learning.
Briefings Bioinform., January, 2023
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Learning to Denoise Unreliable Interactions for Link Prediction on Biomedical Knowledge Graph.
CoRR, 2023
DiffColor: Toward High Fidelity Text-Guided Image Colorization with Diffusion Models.
CoRR, 2023
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023
Proceedings of the International Conference on Machine Learning, 2023
ImmRegInformer: an interpretable Transformer-based method for prioritizing immune-regulatory cancer drivers.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
PACS: Prediction and analysis of cancer subtypes from multi-omics data based on a multi-head attention mechanism model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
LagNet: Deep Lagrangian Mechanics for Plug-and-Play Molecular Representation Learning.
Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023
2022
Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework.
Nat. Mac. Intell., November, 2022
Monodirectional Evolutional Symport Tissue P Systems With Promoters and Cell Division.
IEEE Trans. Parallel Distributed Syst., 2022
3DMol-Net: Learn 3D Molecular Representation Using Adaptive Graph Convolutional Network Based on Rotation Invariance.
IEEE J. Biomed. Health Informatics, 2022
A Robust Algorithm Based on Link Label Propagation for Identifying Functional Modules From Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
An adaptive convergence enhanced evolutionary algorithm for many-objective optimization problems.
Swarm Evol. Comput., 2022
Inf. Comput., 2022
Fuzzy Sets Syst., 2022
CoRR, 2022
MLysPRED: graph-based multi-view clustering and multi-dimensional normal distribution resampling techniques to predict multiple lysine sites.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
Deep learning joint models for extracting entities and relations in biomedical: a survey and comparison.
Briefings Bioinform., 2022
Learning spatial structures of proteins improves protein-protein interaction prediction.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
Briefings Bioinform., 2022
Briefings Bioinform., 2022
A heterogeneous graph cross-omics attention model for single-cell representation learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
ITP-Pred: an interpretable method for predicting, therapeutic peptides with fused features low-dimension representation.
Briefings Bioinform., July, 2021
Mobility Based Trust Evaluation for Heterogeneous Electric Vehicles Network in Smart Cities.
IEEE Trans. Intell. Transp. Syst., 2021
Patterns, 2021
ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties.
Nucleic Acids Res., 2021
Solving a PSPACE-complete problem by symport/antiport P systems with promoters and membrane division.
J. Membr. Comput., 2021
J. Membr. Comput., 2021
Inf. Comput., 2021
CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques.
BMC Bioinform., 2021
Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers.
Bioinform., 2021
Bioinform., 2021
Bioinform., 2021
Briefings Bioinform., 2021
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison.
Briefings Bioinform., 2021
Briefings Bioinform., 2021
De novo generation of dual-target ligands using adversarial training and reinforcement learning.
Briefings Bioinform., 2021
A spatial-temporal gated attention module for molecular property prediction based on molecular geometry.
Briefings Bioinform., 2021
Briefings Bioinform., 2021
Drug repositioning based on the heterogeneous information fusion graph convolutional network.
Briefings Bioinform., 2021
Adv. Intell. Syst., 2021
Proceedings of the CIKM '21: The 30th ACM International Conference on Information and Knowledge Management, Virtual Event, Queensland, Australia, November 1, 2021
Pm<sup>6</sup> A: an Integrated Classification Algorithm for 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Identifying m<sup>6</sup> A Sites.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
LADstackING: Stacking Ensemble Learning-based Computational Model for Predicting Potential LncRNA-disease Associations.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
IEEE Trans. Emerg. Top. Comput. Intell., 2020
A Network Reduction-Based Multiobjective Evolutionary Algorithm for Community Detection in Large-Scale Complex Networks.
IEEE Trans. Cybern., 2020
A Consensus Community-Based Particle Swarm Optimization for Dynamic Community Detection.
IEEE Trans. Cybern., 2020
Multiobjective Particle Swarm Optimization Based on Network Embedding for Complex Network Community Detection.
IEEE Trans. Comput. Soc. Syst., 2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
J. Membr. Comput., 2020
CoRR, 2020
Network-based prediction of drug-target interactions using an arbitrary-order proximity embedded deep forest.
Bioinform., 2020
Identifying enhancer-promoter interactions with neural network based on pre-trained DNA vectors and attention mechanism.
Bioinform., 2020
StackCPPred: a stacking and pairwise energy content-based prediction of cell-penetrating peptides and their uptake efficiency.
Bioinform., 2020
Briefings Bioinform., 2020
Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods.
Briefings Bioinform., 2020
Briefings Bioinform., 2020
Briefings Bioinform., 2020
Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020
Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020
A multi-task learning method for analyzing microbiota as cancer immunotherapy signal.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
MOEA/HD: A Multiobjective Evolutionary Algorithm Based on Hierarchical Decomposition.
IEEE Trans. Cybern., 2019
An Evolutionary Algorithm Based on Minkowski Distance for Many-Objective Optimization.
IEEE Trans. Cybern., 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
PLoS Comput. Biol., 2019
A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications.
PLoS Comput. Biol., 2019
Matrix representation and simulation algorithm of spiking neural P systems with structural plasticity.
J. Membr. Comput., 2019
Inf. Sci., 2019
Bioinform., 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
Prediction of potential disease-associated microRNAs using structural perturbation method.
Bioinform., 2018
IEEE Access, 2018
Proceedings of the Enjoying Natural Computing, 2018
Proceedings of the Enjoying Natural Computing, 2018
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
LncRNA-disease association prediction based on neighborhood information aggregation in neural network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2017
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
PLoS Comput. Biol., 2017
J. Univers. Comput. Sci., 2017
BMC Syst. Biol., 2017
Motion generation of multi-legged robot in complex terrains by using estimation of distribution algorithm.
Proceedings of the 2017 IEEE Symposium Series on Computational Intelligence, 2017
Iteratively collective prediction of disease-gene associations through the incomplete network.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
J. Sensors, 2016
Neurocomputing, 2016
Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy.
BMC Syst. Biol., 2016
Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks.
Briefings Bioinform., 2016
HPTree: Reconstructing phylogenetic trees for ultra-large unaligned DNA sequences via NJ model and Hadoop.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Latent factor model with heterogeneous similarity regularization for predicting gene-disease associations.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
Neurocomputing, 2015
Frontiers Comput. Sci., 2015
A Stable Matching-Based Selection and Memory Enhanced MOEA/D for Evolutionary Dynamic Multiobjective Optimization.
Proceedings of the 27th IEEE International Conference on Tools with Artificial Intelligence, 2015
Short-term optimal hydrothermal scheduling problem considering power flow constraint.
Proceedings of the IEEE Congress on Evolutionary Computation, 2015
Proceedings of the Bio-Inspired Computing - Theories and Applications, 2015
2014
J. Appl. Math., 2014
J. Appl. Math., 2014
Eur. J. Oper. Res., 2014
Sci. China Inf. Sci., 2014
nDNA-prot: identification of DNA-binding proteins based on unbalanced classification.
BMC Bioinform., 2014
Proceedings of the Bio-Inspired Computing - Theories and Applications, 2014
Proceedings of the Bio-Inspired Computing - Theories and Applications, 2014
2013
A Polynomial-Time Solution to Constraint Satisfaction Problems by Neural-like P Systems.
Int. J. Unconv. Comput., 2013
Spiking neural P systems with anti-spikes and without annihilating priority working in a 'flip-flop' way.
Int. J. Comput. Sci. Math., 2013
Proceedings of the Frontiers in Internet Technologies, 2013
Proceedings of The Eighth International Conference on Bio-Inspired Computing: Theories and Applications, 2013
2012
A uniform solution to the independent set problem through tissue P systems with cell separation.
Frontiers Comput. Sci., 2012
2011
A Novel Membrane Algorithm Based on Differential Evolution for Numerical Optimization.
Int. J. Unconv. Comput., 2011
Proceedings of the Sixth International Conference on Bio-Inspired Computing: Theories and Applications, 2011
Proceedings of the Sixth International Conference on Bio-Inspired Computing: Theories and Applications, 2011
Proceedings of the Sixth International Conference on Bio-Inspired Computing: Theories and Applications, 2011
2010
Deterministic solutions to QSAT and Q3SAT by spiking neural P systems with pre-computed resources.
Theor. Comput. Sci., 2010
Proceedings of the Membrane Computing, 2010
Proceedings of the Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 2010
2009
Theor. Comput. Sci., 2009
Proceedings of the Membrane Computing, 10th International Workshop, 2009
2008
On string languages generated by spiking neural P systems with exhaustive use of rules.
Nat. Comput., 2008