Wolfgang Huber

According to our database, Wolfgang Huber authored at least 48 papers between 1991 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data.

Thomas Naake, Johannes Rainer, Wolfgang Huber

Bioinform., October, 2023

htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.

Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze, Wolfgang Huber, Thomas Schwarzl

Bioinform., January, 2023

2022

Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling.

Alina Batzilla, Junyan Lu, Jarno Kivioja, Kerstin Putzker, Joe Lewis, Thorsten Zenz, Wolfgang Huber

PLoS Comput. Biol., 2022

MatrixQCvis: shiny-based interactive data quality exploration for omics data.

Thomas Naake, Wolfgang Huber

Bioinform., 2022

2021

glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data.

Constantin Ahlmann-Eltze, Wolfgang Huber

Bioinform., 2021

2018

Expression Atlas: gene and protein expression across multiple studies and organisms.

Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa L. Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew F. Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak

Nucleic Acids Res., 2018

Authoring Bioconductor workflows with BiocWorkflowTools.

Mike L. Smith, Andrzej K. Oles, Wolfgang Huber

F1000Research, 2018

2016

Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants.

Robert Petryszak, Maria Keays, Y. Amy Tang, Nuno A. Fonseca, Elisabet Barrera, Tony Burdett, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Simon Jupp, Satu Koskinen, Oliver Mannion, Laura Huerta, Karine Megy, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings, Hendrik Weisser, James C. Wright, Pankaj Jaiswal, Wolfgang Huber, Jyoti Choudhary, Helen E. Parkinson, Alvis Brazma

Nucleic Acids Res., 2016

2015

FourCSeq: analysis of 4C sequencing data.

Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber

Bioinform., 2015

SomaticSignatures: inferring mutational signatures from single-nucleotide variants.

Julian Gehring, Bernd Fischer, Michael F. Lawrence, Wolfgang Huber

Bioinform., 2015

HTSeq - a Python framework to work with high-throughput sequencing data.

Simon Anders, Paul Theodor Pyl, Wolfgang Huber

Bioinform., 2015

2014

Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A. Fonseca, Mar Gonzalez-Porta, Emma Hastings, Wolfgang Huber, Simon Jupp, Maria Keays, Nataliya Kryvych, Julie A. McMurry, John C. Marioni, James Malone, Karine Megy, Gabriella Rustici, Y. Amy Tang, Jan Taubert, Eleanor Williams, Oliver Mannion, Helen E. Parkinson, Alvis Brazma

Nucleic Acids Res., 2014

h5vc: scalable nucleotide tallies with HDF5.

Paul Theodor Pyl, Julian Gehring, Bernd Fischer, Wolfgang Huber

Bioinform., 2014

2013

Software for Computing and Annotating Genomic Ranges.

Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey

PLoS Comput. Biol., 2013

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.

Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber

BMC Bioinform., 2013

Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size.

Danni Yu, Wolfgang Huber, Olga Vitek

Bioinform., 2013

CellH5: a format for data exchange in high-content screening.

Christoph Sommer, Michael Held, Bernd Fischer, Wolfgang Huber, Daniel Gerlich

Bioinform., 2013

2011

R Language.

Robert Gentleman, Wolfgang Huber, Vincent J. Carey

Proceedings of the International Encyclopedia of Statistical Science, 2011

Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples.

Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry

BMC Bioinform., 2011

Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi.

Elin Axelsson, Thomas Sandmann, Thomas Horn, Michael Boutros, Wolfgang Huber, Bernd Fischer

BMC Bioinform., 2011

2010

EBImage - an R package for image processing with applications to cellular phenotypes.

Grégoire Pau, Florian Fuchs, Oleg Sklyar, Michael Boutros, Wolfgang Huber

Bioinform., 2010

2009

The hwriter package: Composing HTML documents with R objects.

Grégoire Pau, Wolfgang Huber

R J., 2009

Importing ArrayExpress datasets into R/Bioconductor.

Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber

Bioinform., 2009

arrayQualityMetrics - a bioconductor package for quality assessment of microarray data.

Audrey Kauffmann, Robert Gentleman, Wolfgang Huber

Bioinform., 2009

Array-based genotyping in <i>S.cerevisiae</i> using semi-supervised clustering.

Richard Bourgon, Eugenio Mancera, Alessandro Brozzi, Lars M. Steinmetz, Wolfgang Huber

Bioinform., 2009

2008

Analyzing ChIP-chip Data Using Bioconductor.

Joern Toedling, Wolfgang Huber

PLoS Comput. Biol., 2008

Estimating node degree in bait-prey graphs.

Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman

Bioinform., 2008

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.

Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber

Bioinform., 2008

2007

Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.

Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J. Fischer, Silke Sperling, Wolfgang Huber

BMC Bioinform., 2007

Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.

Joern Toedling, Oleg Sklyar, Wolfgang Huber

BMC Bioinform., 2007

Graphs in molecular biology.

Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman

BMC Bioinform., 2007

In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation.

Tineke Casneuf, Yves Van de Peer, Wolfgang Huber

BMC Bioinform., 2007

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.

Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong

Bioinform., 2007

2006

The LIFEdb database in 2006.

Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy C. Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann

Nucleic Acids Res., 2006

Transcript mapping with high-density oligonucleotide tiling arrays.

Wolfgang Huber, Joern Toedling, Lars M. Steinmetz

Bioinform., 2006

2005

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.

Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber

Bioinform., 2005

arrayMagic: two-colour cDNA microarray quality control, preprocessing.

Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka

Bioinform., 2005

2004

matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.

Wolfgang Huber, Robert Gentleman

Bioinform., 2004

Towards a Rapid Prototyping Framework for Architecture Exploration in Embedded Systems.

Martin Jankela, Wolfgang Puffitsch, Wolfgang Huber

Proceedings of the Second Workshop on Intelligent Solutions in Embedded Systems, 2004

Reproducible Statistical Analysis in Microarray Profiling Studies.

Ulrich Mansmann, Markus Ruschhaupt, Wolfgang Huber

Proceedings of the Applied Parallel Computing, 2004

Interference minimizing bandwidth guaranteed on-line routing algorithm for traffic engineering.

Karl Hendling, Thomas Losert, Wolfgang Huber, Martin Jandl

Proceedings of the 12th IEEE International Conference on Networks, 2004

2003

Processor Support for Temporal Predictability - The SPEAR Design Example.

Martin Delvai, Wolfgang Huber, Peter P. Puschner, Andreas Steininger

Proceedings of the 15th Euromicro Conference on Real-Time Systems (ECRTS 2003), 2003

2002

Variance stabilization applied to microarray data calibration and to the quantification of differential expression.

Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

Variance Stabilization and Robust Normalization for Microarray Gene Expression Data.

Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron

Proceedings of the COMPSTAT 2002, 2002

2001

FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules.

Michael Pitman, Wolfgang Huber, Hans W. Horn, Andreas Krämer, Julia E. Rice, William C. Swope

J. Comput. Aided Mol. Des., 2001

Identifying splits with clear separation: a new class discovery method for gene expression data.

Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

1995

The three-loop model: a neural network for the generation of saccadic reaction times.

Burkhart Fischer, Stefan Gezeck, Wolfgang Huber

Biol. Cybern., 1995

1991

Die EG-Politik im Bereich des Informationsmarktes.

Wolfgang Huber

Proceedings of the Wissensbasierte Informationssysteme und Informationsmanagement: Proceedings des 2. Internationalen Symposiums für Informationswissenschaft, 1991