Wolfgang Gerlach

According to our database, Wolfgang Gerlach authored at least 17 papers between 2006 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

The MG-RAST API explorer: an on-ramp for RESTful query composition.

Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer

BMC Bioinform., 2019

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.

Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke

Briefings Bioinform., 2019

2018

On the way to research objects for environmental genomics (or metagenomics).

Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke

Proceedings of Workshop on Research Objects (RO2018), 2018

2017

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads.

Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji

Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, Las Vegas, NV, USA, December 11, 2017

2016

The MG-RAST metagenomics database and portal in 2015.

Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer

Nucleic Acids Res., 2016

A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST.

Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer

Proceedings of the 2016 annual ACM Conference on SIGSIM Principles of Advanced Discrete Simulation, 2016

2015

A RESTful API for Accessing Microbial Community Data for MG-RAST.

Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer

PLoS Comput. Biol., 2015

Container Orchestration for Scientific Workflows.

Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer

Proceedings of the 2015 IEEE International Conference on Cloud Engineering, 2015

Shock: Active Storage for Multicloud Streaming Data Analysis.

Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer

Proceedings of the 2nd IEEE/ACM International Symposium on Big Data Computing, 2015

2014

Skyport: container-based execution environment management for multi-cloud scientific workflows.

Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer

Proceedings of the 5th International Workshop on Data-Intensive Computing in the Clouds, 2014

Workload characterization for MG-RAST metagenomic data analytics service in the cloud.

Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer

Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

2013

A scalable data analysis platform for metagenomics.

Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

2012

Taxonomic classification of metagenomic sequences.

Wolfgang Gerlach

PhD thesis, 2012

2009

Engineering a compressed suffix tree implementation.

Niko Välimäki, Veli Mäkinen, Wolfgang Gerlach, Kashyap Dixit

ACM J. Exp. Algorithmics, 2009

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.

Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye

BMC Bioinform., 2009

2007

Compressed suffix tree - a basis for genome-scale sequence analysis.

Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen

Bioinform., 2007

2006

GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.

Wolfgang Gerlach, Robert Giegerich

Bioinform., 2006