Witold Dyrka

According to our database, Witold Dyrka authored at least 16 papers between 2007 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins.

Jakub Wojciechowski, Emirhan Tekoglu, Marlena Gasior-Glogowska, Virginie Coustou, Natalia Szulc, Monika Szefczyk, Marta Kopaczynska, Sven J. Saupe, Witold Dyrka

PLoS Comput. Biol., December, 2022

2021

Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars.

Witold Dyrka, Marlena Gasior-Glogowska, Monika Szefczyk, Natalia Szulc

BMC Bioinform., 2021

2020

Unsupervised Grammar Induction for Revealing the Internal Structure of Protein Sequence Motifs.

Olgierd Unold, Mateusz Gabor, Witold Dyrka

Proceedings of the Artificial Intelligence in Medicine, 2020

2018

The first MICCAI challenge on PET tumor segmentation.

Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, Laquan Li, Wei Lu, Vincent Jaouen, Clovis Tauber, Jakub Czakon, Filip Drapejkowski, Witold Dyrka, Sorina Camarasu-Pop, Frédéric Cervenansky, Pascal Girard, Tristan Glatard, Michaël Kain, Yao Yao, Christian Barillot, Assen Kirov, Dimitris Visvikis

Medical Image Anal., 2018

Estimating probabilistic context-free grammars for proteins using contact map constraints.

Witold Dyrka, François Coste, Juliette Talibart

CoRR, 2018

International Conference on Grammatical Inference 2018: Preface.

Olgierd Unold, Witold Dyrka, Wojciech Wieczorek

Proceedings of the 14th International Conference on Grammatical Inference, 2018

How to measure the topological quality of protein parse trees?

Mateusz Pyzik, François Coste, Witold Dyrka

Proceedings of the 14th International Conference on Grammatical Inference, 2018

2017

Quantiprot - a Python package for quantitative analysis of protein sequences.

Bogumil Konopka, Marta Marciniak, Witold Dyrka

BMC Bioinform., 2017

2016

How to measure the topological quality of protein grammars?

Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek

CoRR, 2016

Machine learning methods for accurate delineation of tumors in PET images.

Jakub Czakon, Filip Drapejkowski, Grzegorz Zurek, Piotr Giedziun, Jacek Zebrowski, Witold Dyrka

CoRR, 2016

2013

Probabilistic grammatical model for helix-helix contact site classification.

Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska

Algorithms Mol. Biol., 2013

2010

Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence.

Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska

Proceedings of the Pattern Recognition in Bioinformatics, 2010

2009

A stochastic context free grammar based framework for analysis of protein sequences.

Witold Dyrka, Jean-Christophe Nebel

BMC Bioinform., 2009

Accuracy in Predicting Secondary Structure of Ionic Channels.

Bogumil Konopka, Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska

Proceedings of the New Challenges in Computational Collective Intelligence [selected papers from the 1st International Conference on Collective Intelligence, 2009

2008

Ion flux through membrane channels - An enhanced algorithm for the Poisson-Nernst-Planck model.

Witold Dyrka, Andy T. Augousti, Malgorzata Kotulska

J. Comput. Chem., 2008

2007

A probabilistic context-free grammar for the detection of binding sites from a protein sequence.

Witold Dyrka, Jean-Christophe Nebel

BMC Syst. Biol., 2007