William S. Bush

Orcid: 0000-0002-9729-6519

According to our database1, William S. Bush authored at least 39 papers between 2005 and 2024.

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Bibliography

2024
magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing.
PLoS Comput. Biol., February, 2024

2021
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources.
BMC Bioinform., 2021

2020
Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Frequency of ClinVar Pathogenic Variants in Chronic Kidney Disease Patients Surveyed for Return ofResearch Results at a Cleveland Public Hospital.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Packaging Biocomputing Software to Maximize Distribution and Reuse.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019
Genome-Wide Association Studies.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

2018
Three-dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia.
BMC Bioinform., 2018

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.
Bioinform., 2018

Transition-transversion encoding and genetic relationship metric in ReliefF feature selection improves pathway enrichment in GWAS.
BioData Min., 2018

Local ancestry transitions modify snp-trait associations.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Integrating community-level data resources for precision medicine research.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017
Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants.
Bioinform., 2017

Reducing Clinical Noise for Body Mass Index Measures Due to Unit and Transcription Errors in the Electronic Health Record.
Proceedings of the Summit on Clinical Research Informatics, 2017

2015
Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models.
BMC Bioinform., 2015

Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry.
BioData Min., 2015

2014
SecureMA: protecting participant privacy in genetic association meta-analysis.
Bioinform., 2014

Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies.
BioData Min., 2014

Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome.
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014

2013
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status.
J. Am. Medical Informatics Assoc., 2013

Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists.
Database J. Biol. Databases Curation, 2013

Knowledge-Constrained K-Medoids Clustering of Regulatory Rare Alleles for Burden Tests.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2013

Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population.
Proceedings of the AMIA 2013, 2013

2012
Chapter 11: Genome-Wide Association Studies.
PLoS Comput. Biol., 2012

A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data.
J. Am. Medical Informatics Assoc., 2012

Introduction to bioinformatics and computational biology.
Proceedings of the Genetic and Evolutionary Computation Conference, 2012

2011
Multivariate Analysis of Regulatory Snps: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010
Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus.
Bioinform., 2010

2009
A Knowledge-Driven Multi-Locus Analysis of Multiple Sclerosis Susceptiblity.
PhD thesis, 2009

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium.
BioData Min., 2009

Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks.
Proceedings of the Evolutionary Computation, 2009

2008
Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction.
BMC Bioinform., 2008

Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA.
Proceedings of the Evolutionary Computation, 2008

2007
Genetic programming neural networks: A powerful bioinformatics tool for human genetics.
Appl. Soft Comput., 2007

Association Rule Discovery Has the Ability to Model Complex Genetic Effects.
Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2007

2006
Circadian synchrony in networks of protein rhythm driven neurons.
Complex., 2006

Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions.
Bioinform., 2006

2005
Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?.
Proceedings of the Applications of Evolutionary Computing, 2005


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