William Arndt

According to our database, William Arndt authored at least 15 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Optimizing Checkpoint-Restart Mechanisms for HPC with DMTCP in Containers at NERSC.

Madan Timalsina, Lisa Gerhardt, Nicholas Tyler, Johannes P. Blaschke, William Arndt

CoRR, 2024

Interactive and Urgent HPC: Challenges and Opportunities.

Albert Reuther, Nick Brown, William Arndt, Johannes P. Blaschke, Christian Boehme, Antony Chazapis, Bjoern Enders, Robert Henschel, Julian M. Kunkel, Maxime Martinasso

CoRR, 2024

2023

Workflows Community Summit 2022: A Roadmap Revolution.

Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley, Silvina Caíno-Lores, Kyle Chard, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Manish Parashar, Frédéric Suter, Nick Tyler, Thomas D. Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera-Lierta, Justin Chigu, Tainã Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael R. Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles M. Doutriaux, Matthew Downton, Wael R. Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur García-Sáez, et al.

CoRR, 2023

2022

The LBNL Superfacility Project Report.

Deborah Bard, Cory Snavely, Lisa Gerhardt, Jason Lee, Becci Totzke, Katie Antypas, William Arndt, Johannes P. Blaschke, Suren Byna, Ravi Cheema, Shreyas Cholia, Mark R. Day, Bjoern Enders, Aditi Gaur, Annette Greiner, Taylor L. Groves, Mariam Kiran, Quincey Koziol, Tom Lehman, Kelly Rowland, Chris Samuel, Ashwin Selvarajan, Alex Sim, David Skinner, Laurie Stephey, Rollin C. Thomas, Gabor Torok

CoRR, 2022

2018

Modifying HMMER3 to Run Efficiently on the Cori Supercomputer Using OpenMP Tasking.

William Arndt

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

2017

Analyzing Performance of Selected NESAP Applications on the Cori HPC System.

Thorsten Kurth, William Arndt, Taylor Barnes, Brandon Cook, Jack Deslippe, Douglas Doerfler, Brian Friesen, Yun (Helen) He, Tuomas Koskela, Mathieu Lobet, Tareq M. Malas, Leonid Oliker, Andrey Ovsyannikov, Samuel Williams, Woo-Sun Yang, Zhengji Zhao

Proceedings of the High Performance Computing, 2017

2015

HMMER web server: 2015 update.

Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy

Nucleic Acids Res., 2015

2011

Isolating - a new resampling method for gene order data.

Jian Shi, William Arndt, Fei Hu, Jijun Tang

Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011

Emulating Insertion and Deletion Events in Genome Rearrangement Analysis.

William Arndt, Jijun Tang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.

William Arndt, Thomas M. Asbury, W. Jim Zheng, Matt Mitman, Jijun Tang

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2009

An Exact Solver for the DCJ Median Problem.

Meng Zhang, William Arndt, Jijun Tang

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Improving Reversal Median Computation Using Commuting Reversals and Cycle Information.

William Arndt, Jijun Tang

J. Comput. Biol., 2008

A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem.

Meng Zhang, William Arndt, Jijun Tang

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes.

Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret

Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007

Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.

William Arndt, Jijun Tang

Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007