Wenjia Bai

Orcid: 0000-0003-2943-7698

According to our database1, Wenjia Bai authored at least 124 papers between 2007 and 2024.

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Bibliography

2024
DeepMesh: Mesh-Based Cardiac Motion Tracking Using Deep Learning.
IEEE Trans. Medical Imaging, April, 2024

CHeart: A Conditional Spatio-Temporal Generative Model for Cardiac Anatomy.
IEEE Trans. Medical Imaging, March, 2024

A Personalised 3D+t Mesh Generative Model for Unveiling Normal Heart Dynamics.
CoRR, 2024

TIP: Tabular-Image Pre-training for Multimodal Classification with Incomplete Data.
CoRR, 2024

CMRxRecon2024: A Multi-Modality, Multi-View K-Space Dataset Boosting Universal Machine Learning for Accelerated Cardiac MRI.
CoRR, 2024

A Foundation Model for Brain Lesion Segmentation with Mixture of Modality Experts.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Quantifying the Impact of Population Shift Across Age and Sex for Abdominal Organ Segmentation.
Proceedings of the Ethics and Fairness in Medical Imaging, 2024

Zero-Shot ECG Classification with Multimodal Learning and Test-time Clinical Knowledge Enhancement.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

BiCAL: Bi-directional Contrastive Active Learning for Clinical Report Generation.
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

2023
Causality-Inspired Single-Source Domain Generalization for Medical Image Segmentation.
IEEE Trans. Medical Imaging, April, 2023

Generative myocardial motion tracking via latent space exploration with biomechanics-informed prior.
Medical Image Anal., 2023

T3D: Towards 3D Medical Image Understanding through Vision-Language Pre-training.
CoRR, 2023

G2D: From Global to Dense Radiography Representation Learning via Vision-Language Pre-training.
CoRR, 2023

IMITATE: Clinical Prior Guided Hierarchical Vision-Language Pre-training.
CoRR, 2023

Utilizing Synthetic Data for Medical Vision-Language Pre-training: Bypassing the Need for Real Images.
CoRR, 2023

CMRxRecon: An open cardiac MRI dataset for the competition of accelerated image reconstruction.
CoRR, 2023

Hierarchical Uncertainty Estimation for Medical Image Segmentation Networks.
CoRR, 2023

T1/T2 Relaxation Temporal Modelling from Accelerated Acquisitions Using a Latent Transformer.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Regular and CMRxRecon Challenge Papers, 2023

MoCoSR: Respiratory Motion Correction and Super-Resolution for 3D Abdominal MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

M-FLAG: Medical Vision-Language Pre-training with Frozen Language Models and Latent Space Geometry Optimization.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentation.
Proceedings of the Data Augmentation, Labelling, and Imperfections - Third MICCAI Workshop, 2023

2022
MulViMotion: Shape-Aware 3D Myocardial Motion Tracking From Multi-View Cardiac MRI.
IEEE Trans. Medical Imaging, 2022

Suggestive annotation of brain MR images with gradient-guided sampling.
Medical Image Anal., 2022

Enhancing MR image segmentation with realistic adversarial data augmentation.
Medical Image Anal., 2022

The Extreme Cardiac MRI Analysis Challenge under Respiratory Motion (CMRxMotion).
CoRR, 2022

Generative Modelling of the Ageing Heart with Cross-Sectional Imaging and Clinical Data.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Regular and CMRxMotion Challenge Papers, 2022

Memory-efficient Segmentation of High-resolution Volumetric MicroCT Images.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2022

Improved Post-hoc Probability Calibration for Out-of-Domain MRI Segmentation.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2022

Mesh-Based 3D Motion Tracking in Cardiac MRI Using Deep Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

MaxStyle: Adversarial Style Composition for Robust Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Subject-Specific Lesion Generation and Pseudo-Healthy Synthesis for Multiple Sclerosis Brain Images.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2022

2021
QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results.
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CoRR, 2021

Enhancing MR Image Segmentation with Realistic Adversarial Data Augmentation.
CoRR, 2021

Joint Semi-supervised 3D Super-Resolution and Segmentation with Mixed Adversarial Gaussian Domain Adaptation.
CoRR, 2021

Joint Motion Correction and Super Resolution for Cardiac Segmentation via Latent Optimisation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

DeepMCAT: Large-Scale Deep Clustering for Medical Image Categorization.
Proceedings of the Deep Generative Models, and Data Augmentation, Labelling, and Imperfections, 2021

Cooperative Training and Latent Space Data Augmentation for Robust Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Dynamic Spatio-Temporal Graph Convolutional Networks For Cardiac Motion Analysis.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Multiscale Graph Convolutional Networks for Cardiac Motion Analysis.
Proceedings of the Functional Imaging and Modeling of the Heart, 2021

2020
Explainable Anatomical Shape Analysis Through Deep Hierarchical Generative Models.
IEEE Trans. Medical Imaging, 2020

Suggestive Annotation of Brain Tumour Images with Gradient-guided Sampling.
CoRR, 2020

A Global Benchmark of Algorithms for Segmenting Late Gadolinium-Enhanced Cardiac Magnetic Resonance Imaging.
CoRR, 2020

Efficient Deep Representation Learning by Adaptive Latent Space Sampling.
CoRR, 2020

Going Deeper into Cardiac Motion Analysis to Model Fine Spatio-Temporal Features.
Proceedings of the Medical Image Understanding and Analysis - 24th Annual Conference, 2020

Deep Generative Model-Based Quality Control for Cardiac MRI Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Quality-Aware Semi-supervised Learning for CMR Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges, 2020

Biomechanics-Informed Neural Networks for Myocardial Motion Tracking in MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Modelling Cardiac Motion via Spatio-Temporal Graph Convolutional Networks to Boost the Diagnosis of Heart Conditions.
Proceedings of the Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges, 2020

Suggestive Annotation of Brain Tumour Images with Gradient-Guided Sampling.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Realistic Adversarial Data Augmentation for MR Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Self-training for Brain Tumour Segmentation with Uncertainty Estimation and Biophysics-Guided Survival Prediction.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020

2019
Learning-Based Quality Control for Cardiac MR Images.
IEEE Trans. Medical Imaging, 2019

Automatic 3D Bi-Ventricular Segmentation of Cardiac Images by a Shape-Refined Multi- Task Deep Learning Approach.
IEEE Trans. Medical Imaging, 2019

Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort.
PLoS Comput. Biol., 2019

Deep learning for cardiac image segmentation: A review.
CoRR, 2019

Improving the generalizability of convolutional neural network-based segmentation on CMR images.
CoRR, 2019

Explainable Shape Analysis through Deep Hierarchical Generative Models: Application to Cardiac Remodeling.
CoRR, 2019

Automated Quality Control in Image Segmentation: Application to the UK Biobank Cardiac MR Imaging Study.
CoRR, 2019

High-quality segmentation of low quality cardiac MR images using k-space artefact correction.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

Transfer Learning from Partial Annotations for Whole Brain Segmentation.
Proceedings of the Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data, 2019

Self-Supervised Learning for Cardiac MR Image Segmentation by Anatomical Position Prediction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Unsupervised Multi-modal Style Transfer for Cardiac MR Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Multi-Sequence CMR Segmentation, CRT-EPiggy and LV Full Quantification Challenges, 2019

Learning Shape Priors for Robust Cardiac MR Segmentation from Multi-view Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

VS-Net: Variable Splitting Network for Accelerated Parallel MRI Reconstruction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Automatic Brain Tumour Segmentation and Biophysics-Guided Survival Prediction.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2019

2018
Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation.
IEEE Trans. Medical Imaging, 2018

Statistical Shape Modeling of the Left Ventricle: Myocardial Infarct Classification Challenge.
IEEE J. Biomed. Health Informatics, 2018

Multi-Atlas Segmentation Using Partially Annotated Data: Methods and Annotation Strategies.
IEEE Trans. Pattern Anal. Mach. Intell., 2018

Myocardial strain computed at multiple spatial scales from tagged magnetic resonance imaging: Estimating cardiac biomarkers for CRT patients.
Medical Image Anal., 2018

Automatic 3D bi-ventricular segmentation of cardiac images by a shape-constrained multi-task deep learning approach.
CoRR, 2018

Domain Adaptation for MRI Organ Segmentation using Reverse Classification Accuracy.
CoRR, 2018

Learning-Based Quality Control for Cardiac MR Images.
CoRR, 2018

Three-dimensional cardiovascular imaging-genetics: a mass univariate framework.
Bioinform., 2018

A Comprehensive Approach for Learning-Based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Cardiac MR Segmentation from Undersampled k-space Using Deep Latent Representation Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Bayesian Deep Learning for Accelerated MR Image Reconstruction.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2018


Joint Motion Estimation and Segmentation from Undersampled Cardiac MR Image.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2018

Joint Learning of Motion Estimation and Segmentation for Cardiac MR Image Sequences.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep Nested Level Sets: Fully Automated Segmentation of Cardiac MR Images in Patients with Pulmonary Hypertension.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Combining Deep Learning and Shape Priors for Bi-Ventricular Segmentation of Volumetric Cardiac Magnetic Resonance Images.
Proceedings of the Shape in Medical Imaging, 2018

Multi-task Learning for Left Atrial Segmentation on GE-MRI.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges, 2018

Learning Interpretable Anatomical Features Through Deep Generative Models: Application to Cardiac Remodeling.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Recurrent Neural Networks for Aortic Image Sequence Segmentation with Sparse Annotations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Automatic View Planning with Multi-scale Deep Reinforcement Learning Agents.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Fully automated myocardial strain estimation from cine MRI using convolutional neural networks.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Human-level Performance On Automatic Head Biometrics In Fetal Ultrasound Using Fully Convolutional Neural Networks.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

The Effects of Non-ischemic Fibrosis Texture and Density on Mechanisms of Reentry.
Proceedings of the Computing in Cardiology, 2018

2017
Reverse Classification Accuracy: Predicting Segmentation Performance in the Absence of Ground Truth.
IEEE Trans. Medical Imaging, 2017

DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks.
IEEE Trans. Medical Imaging, 2017

Stratified Decision Forests for Accurate Anatomical Landmark Localization in Cardiac Images.
IEEE Trans. Medical Imaging, 2017

A framework for combining a motion atlas with non-motion information to learn clinically useful biomarkers: Application to cardiac resynchronisation therapy response prediction.
Medical Image Anal., 2017

Human-level CMR image analysis with deep fully convolutional networks.
CoRR, 2017

Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation.
CoRR, 2017

Fully Automated Segmentation-Based Respiratory Motion Correction of Multiplanar Cardiac Magnetic Resonance Images for Large-Scale Datasets.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Automatic Quality Control of Cardiac MRI Segmentation in Large-Scale Population Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2017

Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Learning-Based Heart Coverage Estimation for Short-Axis Cine Cardiac MR Images.
Proceedings of the Functional Imaging and Modelling of the Heart, 2017

2016
DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks.
CoRR, 2016

Learning Optimal Spatial Scales for Cardiac Strain Analysis Using a Motion Atlas.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2016

Multi-input Cardiac Image Super-Resolution Using Convolutional Neural Networks.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Respiratory Motion Correction for 2D Cine Cardiac MR Images using Probabilistic Edge Maps.
Proceedings of the Computing in Cardiology, CinC 2016, Vancouver, 2016

2015
Right ventricle segmentation from cardiac MRI: A collation study.
Medical Image Anal., 2015

A bi-ventricular cardiac atlas built from 1000+ high resolution MR images of healthy subjects and an analysis of shape and motion.
Medical Image Anal., 2015

Multi-atlas segmentation with augmented features for cardiac MR images.
Medical Image Anal., 2015

Towards Left Ventricular Scar Localisation Using Local Motion Descriptors.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Prospective Identification of CRT Super Responders Using a Motion Atlas and Random Projection Ensemble Learning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Beyond the AHA 17-Segment Model: Motion-Driven Parcellation of the Left Ventricle.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Classification of Myocardial Infarcted Patients by Combining Shape and Motion Features.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Prediction of Clinical Information from Cardiac MRI Using Manifold Learning.
Proceedings of the Functional Imaging and Modeling of the Heart, 2015

Probabilistic Edge Map (PEM) for 3D Ultrasound Image Registration and Multi-atlas Left Ventricle Segmentation.
Proceedings of the Functional Imaging and Modeling of the Heart, 2015

Learning a Global Descriptor of Cardiac Motion from a Large Cohort of 1000+ Normal Subjects.
Proceedings of the Functional Imaging and Modeling of the Heart, 2015

2014
Multi-atlas Spectral PatchMatch: Application to Cardiac Image Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Application-Driven MRI: Joint Reconstruction and Segmentation from Undersampled MRI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Patch-Based Evaluation of Image Segmentation.
Proceedings of the 2014 IEEE Conference on Computer Vision and Pattern Recognition, 2014

2013
A Probabilistic Patch-Based Label Fusion Model for Multi-Atlas Segmentation With Registration Refinement: Application to Cardiac MR Images.
IEEE Trans. Medical Imaging, 2013

Temporal sparse free-form deformations.
Medical Image Anal., 2013

Cardiac Image Super-Resolution with Global Correspondence Using Multi-Atlas PatchMatch.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

2012
Registration Using Sparse Free-Form Deformations.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011
Motion Correction and Attenuation Correction for Respiratory Gated PET Images.
IEEE Trans. Medical Imaging, 2011

2009
Spatio-Temporal Image Registration for Respiratory Motion Correction in PET Imaging.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
Imaging of Calcium Oscillation in Mouse Oocyte/zygote by Two Photon Laser Scanning Microscopy.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007
Tracking of Migrating Glioma Cells in Feature Space.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007


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