Wengong Jin

Orcid: 0000-0002-0555-3056

According to our database1, Wengong Jin authored at least 33 papers between 2015 and 2024.

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Bibliography

2024
Deep generative design of RNA aptamers using structural predictions.
Nat. Comput. Sci., November, 2024

Discovery of a structural class of antibiotics with explainable deep learning.
Nat., February, 2024

Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions.
CoRR, 2024

Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

SurfPro: Functional Protein Design Based on Continuous Surface.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

2023
Unsupervised Protein-Ligand Binding Energy Prediction via Neural Euler's Rotation Equation.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Graph and Geometry Generative Modeling for Drug Discovery.
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

2022
Antibody-Antigen Docking and Design via Hierarchical Equivariant Refinement.
CoRR, 2022

Antibody-Antigen Docking and Design via Hierarchical Structure Refinement.
Proceedings of the International Conference on Machine Learning, 2022

Iterative Refinement Graph Neural Network for Antibody Sequence-Structure Co-design.
Proceedings of the Tenth International Conference on Learning Representations, 2022

2021
Graph Representation Learning for Drug Discovery.
PhD thesis, 2021

Deep learning identifies synergistic drug combinations for treating COVID-19.
Proc. Natl. Acad. Sci. USA, 2021

Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2021

2020
Discovering Synergistic Drug Combinations for COVID with Biological Bottleneck Models.
CoRR, 2020

Improved Conditional Flow Models for Molecule to Image Synthesis.
CoRR, 2020

Domain Extrapolation via Regret Minimization.
CoRR, 2020

Adaptive Invariance for Molecule Property Prediction.
CoRR, 2020

Composing Molecules with Multiple Property Constraints.
CoRR, 2020

Improving Molecular Design by Stochastic Iterative Target Augmentation.
Proceedings of the 37th International Conference on Machine Learning, 2020

Multi-Objective Molecule Generation using Interpretable Substructures.
Proceedings of the 37th International Conference on Machine Learning, 2020

Hierarchical Generation of Molecular Graphs using Structural Motifs.
Proceedings of the 37th International Conference on Machine Learning, 2020

2019
Correction to Analyzing Learned Molecular Representations for Property Prediction.
J. Chem. Inf. Model., 2019

Analyzing Learned Molecular Representations for Property Prediction.
J. Chem. Inf. Model., 2019

Multi-resolution Autoregressive Graph-to-Graph Translation for Molecules.
CoRR, 2019

Are Learned Molecular Representations Ready For Prime Time?
CoRR, 2019

Functional Transparency for Structured Data: a Game-Theoretic Approach.
Proceedings of the 36th International Conference on Machine Learning, 2019

Learning Multimodal Graph-to-Graph Translation for Molecule Optimization.
Proceedings of the 7th International Conference on Learning Representations, 2019

2018
Learning Multimodal Graph-to-Graph Translation for Molecular Optimization.
CoRR, 2018

Junction Tree Variational Autoencoder for Molecular Graph Generation.
Proceedings of the 35th International Conference on Machine Learning, 2018

2017
Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

Deriving Neural Architectures from Sequence and Graph Kernels.
Proceedings of the 34th International Conference on Machine Learning, 2017

2015
Paragraph vector based topic model for language model adaptation.
Proceedings of the 16th Annual Conference of the International Speech Communication Association, 2015


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