Weichuan Yu

Orcid: 0000-0002-5510-6916

Affiliations:
  • Hong Kong University of Science and Technology


According to our database1, Weichuan Yu authored at least 77 papers between 1998 and 2024.

Collaborative distances:

Timeline

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Bibliography

2024
DCES-PA: Deformation-controllable elastic shape model for 3D bone proliferation analysis using hand HR-pQCT images.
Comput. Biol. Medicine, 2024

2023
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis.
BMC Bioinform., December, 2023

Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images.
Comput. Medical Imaging Graph., June, 2023

Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2021
Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2020
Data imbalance in CRISPR off-target prediction.
Briefings Bioinform., 2020

2019
Xolik: finding cross-linked peptides with maximum paired scores in linear time.
Bioinform., 2019

2018
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility.
Bioinform., 2018

2017
Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies.
Bioinform., 2017

What is the probability of replicating a statistically significant association in genome-wide association studies?
Briefings Bioinform., 2017

2016
Erratum to "On Feature Motion Decorrelation in Ultrasound Speckle Tracking".
IEEE Trans. Medical Imaging, 2016

Power estimation and sample size determination for replication studies of genome-wide association studies.
BMC Genom., 2016

ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database.
BMC Bioinform., 2016

FPGA implementation of the coupled filtering method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

GBOOST 2.0: A GPU-based tool for detecting gene-gene interactions with covariates adjustment in genome-wide association studies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies.
Bioinform., 2015

2014
Low-Rank Modeling and Its Applications in Image Analysis.
ACM Comput. Surv., 2014

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations.
Bioinform., 2014

2013
On Feature Motion Decorrelation in Ultrasound Speckle Tracking.
IEEE Trans. Medical Imaging, 2013

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

A Combinatorial Perspective of the Protein Inference Problem.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation.
IEEE Trans. Pattern Anal. Mach. Intell., 2013

Active Contours with Group Similarity.
Proceedings of the 2013 IEEE Conference on Computer Vision and Pattern Recognition, 2013

2012
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering".
Comput. Electr. Eng., 2012

Comments on 'An empirical comparison of several recent epistatic interaction detection methods'.
Bioinform., 2012

Protein inference: a review.
Briefings Bioinform., 2012

Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012

2011
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

A hidden two-locus disease association pattern in genome-wide association studies.
BMC Bioinform., 2011

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies.
BMC Bioinform., 2011

Score regularization for peptide identification.
BMC Bioinform., 2011

Motif-All: discovering all phosphorylation motifs.
BMC Bioinform., 2011

GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies.
Bioinform., 2011

Identifying disease-associated SNP clusters via contiguous outlier detection.
Bioinform., 2011

A brief review of signal processing issues in mass spectrometry-based proteomics studies.
Proceedings of the Conference Record of the Forty Fifth Asilomar Conference on Signals, 2011

2010
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification.
J. Comput. Biol., 2010

BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies
CoRR, 2010

Stable feature selection for biomarker discovery.
Comput. Biol. Chem., 2010

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso.
BMC Bioinform., 2010

Detecting two-locus associations allowing for interactions in genome-wide association studies.
Bioinform., 2010

Predictive rule inference for epistatic interaction detection in genome-wide association studies.
Bioinform., 2010

Accurate segmentation of ultrasound images using the motion cue.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

A coupled filtering method to solve feature-motion decorrelation in speckle tracking.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

SyncPro : A synchronized visualization tool for differential analysis of proteomics data sets.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis.
BMC Bioinform., 2009

Semi-supervised protein subcellular localization.
BMC Bioinform., 2009

MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study.
BMC Bioinform., 2009

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies.
Bioinform., 2009

Improving peptide identification with single-stage mass spectrum peaks.
Bioinform., 2009

2008
Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal?
J. Electr. Comput. Eng., 2008

Peak bagging for peptide mass fingerprinting.
Bioinform., 2008

2007
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry.
Comput. Biol. Chem., 2007

2006
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking.
Medical Image Anal., 2006

Detecting and aligning peaks in mass spectrometry data with applications to MALDI.
Comput. Biol. Chem., 2006

2005
Using skew Gabor filter in source signal separation and local spectral orientation analysis.
Image Vis. Comput., 2005

Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004
The Choice of Tracking Feature In Ultrasound-Based Strain Imaging Analysis.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Pointwise Motion Tracking in Echocardiographic Images.
Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis.
Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

2003
Combinative multi-scale level set framework for echocardiographic image segmentation.
Medical Image Anal., 2003

Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis.
Image Vis. Comput., 2003

Multiple motion analysis: in spatial or in spectral domain?
Comput. Vis. Image Underst., 2003

Motion Analysis of 3D Ultrasound Texture Patterns.
Proceedings of the Functional Imaging and Modeling of the Heart, 2003

2002
Oriented Structure of the Occlusion Distortion: Is It Reliable?
IEEE Trans. Pattern Anal. Mach. Intell., 2002

2001
Approximate orientation steerability based on angular Gaussians.
IEEE Trans. Image Process., 2001

Skewness of Gabor Wavelets and Source Signal Separation.
Proceedings of the Wavelet Analysis and Its Applications, Second International Conference, 2001

3D-Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001

2000
Local orientation analysis in images and image sequences using steerable filters.
PhD thesis, 2000

Eliminating Outliers in Motion Occlusion Analysis.
Proceedings of the Mustererkennung 2000, 2000

A New 3D Orientation Steerable Filter.
Proceedings of the Mustererkennung 2000, 2000

1999
Detection and Characterization of Multiple Motion Points.
Proceedings of the 1999 Conference on Computer Vision and Pattern Recognition (CVPR '99), 1999

1998
Low-Cost Junction Characterization using Polar Averaging Filters.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

Junction Characterization Using Polar Pyramid.
Proceedings of the Mustererkennung 1998, 20. DAGM-Symposium, Stuttgart, 29. September, 1998

Rotated Wedge Averaging Method for Junction Classification.
Proceedings of the 1998 Conference on Computer Vision and Pattern Recognition (CVPR '98), 1998


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