Wasila M. Dahdul

According to our database, Wasila M. Dahdul authored at least 21 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

What Do You See in Common? Learning Hierarchical Prototypes over Tree-of-Life to Discover Evolutionary Traits.

Harish Babu Manogaran, M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Caleb Charpentier, Josef C. Uyeda, Wasila M. Dahdul, Matthew J. Thompson, Elizabeth G. Campolongo, Kaiya Provost, Paula M. Mabee, Hilmar Lapp, Anuj Karpatne

CoRR, 2024

VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images.

M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Wasila M. Dahdul, Anuj Karpatne

CoRR, 2024

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution.

Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne

CoRR, 2024

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images.

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne

CoRR, 2024

BioCLIP: A Vision Foundation Model for the Tree of Life.

Samuel Stevens, Jiaman Wu, Matthew J. Thompson, Elizabeth G. Campolongo, Chan Hee Song, David Edward Carlyn, Li Dong, Wasila M. Dahdul, Charles V. Stewart, Tanya Y. Berger-Wolf, Wei-Lun Chao, Yu Su

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks.

Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

2020

Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species.

Jeremy Leipzig, Yasin Bakis, Xiaojun Wang, Mohannad Elhamod, Kelly Diamond, Wasila M. Dahdul, Anuj Karpatne, A. Murat Maga, Paula M. Mabee, Henry L. Bart Jr., Jane Greenberg

Proceedings of the Metadata and Semantic Research - 14th International Conference, 2020

2018

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology.

Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.

Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee

Database J. Biol. Databases Curation, 2018

Reasoning over Anatomical Homology in the Phenoscape KB.

Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2016

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Alexander D. Diehl, Terrence F. Meehan, Yvonne M. Bradford, Matthew H. Brush, Wasila M. Dahdul, David S. Dougall, Yongqun He, David Osumi-Sutherland, Alan Ruttenberg, Sirarat Sarntivijai, Ceri E. Van Slyke, Nicole A. Vasilevsky, Melissa A. Haendel, Judith A. Blake, Christopher J. Mungall

J. Biomed. Semant., 2016

2015

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.

Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Paula M. Mabee

Database J. Biol. Databases Curation, 2015

CharaParser+EQ: Performance evaluation without gold standard.

Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan

Proceedings of the Information Science with Impact: Research in and for the Community, 2015

2014

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Melissa A. Haendel, James P. Balhoff, Frederic B. Bastian, David C. Blackburn, Judith A. Blake, Yvonne M. Bradford, Aurélie Comte, Wasila M. Dahdul, Thomas Dececchi, Robert E. Druzinsky, Terry F. Hayamizu, Nizar Ibrahim, Suzanna E. Lewis, Paula M. Mabee, Anne Niknejad, Marc Robinson-Rechavi, Paul C. Sereno, Christopher J. Mungall

J. Biomed. Semant., 2014

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.

Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel

J. Biomed. Semant., 2014

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.

James P. Balhoff, Wasila M. Dahdul, Thomas Dececchi, Hilmar Lapp, Paula M. Mabee, Todd J. Vision

J. Biomed. Semant., 2014

2013

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua D. Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn

J. Biomed. Semant., 2013

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.

Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn

J. Biomed. Semant., 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu

Database J. Biol. Databases Curation, 2013

2011

Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes.

Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Employing Reasoning within the Phenoscape Knowledgebase.

James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011