W. James Kent

According to our database, W. James Kent authored at least 41 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The UCSC Genome Browser database: 2023 update.

Luis R. Nassar, Galt P. Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clayton M. Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Brian T. Lee, Christopher M. Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J. Raney, Daniel Schmelter, Matthew L. Speir, Brittney D. Wick, Ann S. Zweig, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent

Nucleic Acids Res., January, 2023

2022

The UCSC Genome Browser database: 2022 update.

Brian T. Lee, Galt P. Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clayton M. Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Christopher M. Lee, Pranav Muthuraman, Luis R. Nassar, Beagan Nguy, Tiana Pereira, Gerardo Perez, Brian J. Raney, Kate R. Rosenbloom, Daniel Schmelter, Matthew L. Speir, Brittney D. Wick, Ann S. Zweig, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent

Nucleic Acids Res., 2022

2021

The UCSC Genome Browser database: 2021 update.

Jairo Navarro Gonzalez, Ann S. Zweig, Matthew L. Speir, Daniel Schmelter, Kate R. Rosenbloom, Brian J. Raney, Conner C. Powell, Luis R. Nassar, Nathan D. Maulding, Christopher M. Lee, Brian T. Lee, Angie S. Hinrichs, Alastair C. Fyfe, Jason D. Fernandes, Mark Diekhans, Hiram Clawson, Jonathan Casper, Anna Benet-Pagès, Galt P. Barber, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent

Nucleic Acids Res., 2021

UCSC Cell Browser: visualize your single-cell data.

Matthew L. Speir, Aparna Bhaduri, Nikolay S. Markov, Pablo A. Moreno, Tomasz J. Nowakowski, Irene Papatheodorou, Alex A. Pollen, Brian J. Raney, Lucas Seninge, W. James Kent, Maximilian Haeussler

Bioinform., 2021

2020

UCSC Genome Browser enters 20th year.

Christopher M. Lee, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Jairo Navarro Gonzalez, Angie S. Hinrichs, Brian T. Lee, Luis R. Nassar, Conner C. Powell, Brian J. Raney, Kate R. Rosenbloom, Daniel Schmelter, Matthew L. Speir, Ann S. Zweig, David Haussler, Maximilian Haeussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2020

2019

The UCSC Genome Browser database: 2019 update.

Maximilian Haeussler, Ann S. Zweig, Cath Tyner, Matthew L. Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M. Lee, Brian T. Lee, Angie S. Hinrichs, Jairo Navarro Gonzalez, David Gibson, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P. Barber, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2019

2018

The UCSC Genome Browser database: 2018 update.

Jonathan Casper, Ann S. Zweig, Chris Villarreal, Cath Tyner, Matthew L. Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M. Lee, Brian T. Lee, Donna Karolchik, Angie S. Hinrichs, Maximilian Haeussler, Luvina Guruvadoo, Jairo Navarro Gonzalez, David Gibson, Ian T. Fiddes, Christopher Eisenhart, Mark Diekhans, Hiram Clawson, Galt P. Barber, Joel Armstrong, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2018

2017

The UCSC Genome Browser database: 2017 update.

Cath Tyner, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Christopher Eisenhart, Clayton M. Fischer, David Gibson, Jairo Navarro Gonzalez, Luvina Guruvadoo, Maximilian Haeussler, Steven G. Heitner, Angie S. Hinrichs, Donna Karolchik, Brian T. Lee, Christopher M. Lee, Parisa Nejad, Brian J. Raney, Kate R. Rosenbloom, Matthew L. Speir, Chris Villarreal, John Vivian, Ann S. Zweig, David Haussler, Michael Kuhn, W. James Kent

Nucleic Acids Res., 2017

2016

The UCSC Genome Browser database: 2016 update.

Matthew L. Speir, Ann S. Zweig, Kate R. Rosenbloom, Brian J. Raney, Benedict Paten, Parisa Nejad, Brian T. Lee, Katrina Learned, Donna Karolchik, Angie S. Hinrichs, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Pauline A. Fujita, Christopher Eisenhart, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P. Barber, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2016

UCSC Data Integrator and Variant Annotation Integrator.

Angie S. Hinrichs, Brian J. Raney, Matthew L. Speir, Brooke L. Rhead, Jonathan Casper, Donna Karolchik, Robert M. Kuhn, Kate R. Rosenbloom, Ann S. Zweig, David Haussler, W. James Kent

Bioinform., 2016

2015

The UCSC Genome Browser database: 2015 update.

Kate R. Rosenbloom, Joel Armstrong, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2015

Building a Pan-Genome Reference for a Population.

Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten

J. Comput. Biol., 2015

The NIH BD2K center for big data in translational genomics.

Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler

J. Am. Medical Informatics Assoc., 2015

Navigating protected genomics data with UCSC Genome Browser in a Box.

Maximilian Haeussler, Brian J. Raney, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Donna Karolchik, Jonathan Casper, Matthew L. Speir, David Haussler, W. James Kent

Bioinform., 2015

Ontology application and use at the ENCODE DCC.

Venkat S. Malladi, Drew T. Erickson, Nikhil R. Podduturi, Laurence D. Rowe, Esther T. Chan, Jean M. Davidson, Benjamin C. Hitz, Marcus Ho, Brian T. Lee, Stuart R. Miyasato, Greg R. Roe, Matt Simison, Cricket A. Sloan, J. Seth Strattan, Forrest Tanaka, W. James Kent, J. Michael Cherry, Eurie L. Hong

Database J. Biol. Databases Curation, 2015

2014

The UCSC Genome Browser database: 2014 update.

Donna Karolchik, Galt P. Barber, Jonathan Casper, Hiram Clawson, Melissa S. Cline, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Angie S. Hinrichs, Katrina Learned, Brian T. Lee, Chin H. Li, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Cricket A. Sloan, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent

Nucleic Acids Res., 2014

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Brian J. Raney, Timothy R. Dreszer, Galt P. Barber, Hiram Clawson, Pauline A. Fujita, Ting Wang, Ngan Nguyen, Benedict Paten, Ann S. Zweig, Donna Karolchik, W. James Kent

Bioinform., 2014

Comparative assembly hubs: Web-accessible browsers for comparative genomics.

Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann S. Zweig, Donna Karolchik, William James Kent, David Haussler, Benedict Paten

Bioinform., 2014

2013

ENCODE Data in the UCSC Genome Browser: year 5 update.

Kate R. Rosenbloom, Cricket A. Sloan, Venkat S. Malladi, Timothy R. Dreszer, Katrina Learned, Vanessa Kirkup, Matthew C. Wong, Morgan Maddren, Ruihua Fang, Steven G. Heitner, Brian T. Lee, Galt P. Barber, Rachel A. Harte, Mark Diekhans, Jeffrey C. Long, Steven P. Wilder, Ann S. Zweig, Donna Karolchik, Robert M. Kuhn, David Haussler, W. James Kent

Nucleic Acids Res., 2013

The UCSC Genome Browser database: extensions and updates 2013.

Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2013

The UCSC genome browser and associated tools.

Robert M. Kuhn, David Haussler, W. James Kent

Briefings Bioinform., 2013

2012

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2012

The UCSC Genome Browser database: extensions and updates 2011.

Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2012

2011

The UCSC cancer genomics browser: update 2011.

J. Zachary Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Laurence R. Meyer, Charles J. Vaske, Mary Goldman, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, W. James Kent, Joshua M. Stuart, David Haussler, Jingchun Zhu

Nucleic Acids Res., 2011

ENCODE whole-genome data in the UCSC genome browser (2011 update).

Brian J. Raney, Melissa S. Cline, Kate R. Rosenbloom, Timothy R. Dreszer, Katrina Learned, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Krishna M. Roskin, Bernard B. Suh, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Vanessa Kirkup, Pauline A. Fujita, Brooke L. Rhead, Kayla E. Smith, Andy Pohl, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent

Nucleic Acids Res., 2011

The UCSC Genome Browser database: update 2011.

Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, António Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent

Nucleic Acids Res., 2011

2010

ENCODE whole-genome data in the UCSC Genome Browser.

Kate R. Rosenbloom, Timothy R. Dreszer, Michael Pheasant, Galt P. Barber, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Ting Wang, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Katrina Learned, Brooke L. Rhead, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent

Nucleic Acids Res., 2010

The UCSC Genome Browser database: update 2010.

Brooke L. Rhead, Donna Karolchik, Robert M. Kuhn, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Mark Diekhans, Kayla E. Smith, Kate R. Rosenbloom, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Katrina Learned, Fan Hsu, Jennifer Hillman-Jackson, Rachel A. Harte, Belinda Giardine, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2010

BigWig and BigBed: enabling browsing of large distributed datasets.

W. James Kent, Ann S. Zweig, Galt P. Barber, Angie S. Hinrichs, Donna Karolchik

Bioinform., 2010

2009

The UCSC Genome Browser Database: update 2009.

Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Ting Wang, Kayla E. Smith, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2009

2008

The UCSC Genome Browser Database: 2008 update.

Donna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober, Webb Miller, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2008

2007

Variation resources at UC Santa Cruz.

Daryl J. Thomas, Heather Trumbower, Andrew D. Kern, Brooke L. Rhead, Robert M. Kuhn, David Haussler, W. James Kent

Nucleic Acids Res., 2007

The ENCODE Project at UC Santa Cruz.

Daryl J. Thomas, Kate R. Rosenbloom, Hiram Clawson, Angie S. Hinrichs, Heather Trumbower, Brian J. Raney, Donna Karolchik, Galt P. Barber, Rachel A. Harte, Jennifer Hillman-Jackson, Robert M. Kuhn, Brooke L. Rhead, Kayla E. Smith, Archana Thakkapallayil, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2007

The UCSC genome browser database: update 2007.

Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent

Nucleic Acids Res., 2007

2006

The UCSC Genome Browser Database: update 2006.

Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2006

The UCSC Known Genes.

Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler

Bioinform., 2006

2005

The UCSC Proteome Browser.

Fan Hsu, Tom H. Pringle, Robert M. Kuhn, Donna Karolchik, Mark Diekhans, David Haussler, W. James Kent

Nucleic Acids Res., 2005

2004

The UCSC Table Browser data retrieval tool.

Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent

Nucleic Acids Res., 2004

Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice.

Charles W. Sugnet, W. James Kent, Manuel Ares, David Haussler

Proceedings of the Biocomputing 2004, 2004

2003

The UCSC Genome Browser Database.

Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Yontao Lu, Krishna M. Roskin, Matt Schwartz, Charles W. Sugnet, Daryl J. Thomas, Ryan J. Weber, David Haussler, W. James Kent

Nucleic Acids Res., 2003

2000

The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans.

W. James Kent, Alan M. Zahler

Nucleic Acids Res., 2000