Vladimir N. Uversky

According to our database, Vladimir N. Uversky authored at least 35 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants.

Sk. Sarif Hassan, Tanishta Bhattacharya, Debaleena Nawn, Ishana Jha, Pallab Basu, Elrashdy M. Redwan, Kenneth Lundstrom, Debmalya Barh, Bruno Silva Andrade, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Altijana Hromic-Jahjefendic, Wagner Baetas-da-Cruz, Ángel Serrano-Aroca, Vladimir N. Uversky

Comput. Biol. Medicine, March, 2024

2023

Predicting TF Proteins by Incorporating Evolution Information Through PSSM.

Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences.

Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins.

Min Fang, Yufeng He, Zhihua Du, Vladimir N. Uversky

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Insights into the structural peculiarities of the <i>N</i>-terminal and receptor binding domains of the spike protein from the SARS-CoV-2 Omicron variant.

Fatemeh Bayani, Negin Safaei Hashkavaei, Vladimir N. Uversky, Sina Mozaffari-Jovin, Yahya Sefidbakht

Comput. Biol. Medicine, 2022

Inference of gene regulatory networks based on the Light Gradient Boosting Machine.

Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky

Comput. Biol. Chem., 2022

2021

A unique view of SARS-CoV-2 through the lens of ORF8 protein.

Sarif Sk. Hassan, Alaa A. A. Aljabali, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Antonio Soares, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra Sherchan, Wagner Baetas-da-Cruz, Bruce D. Uhal, Nima Rezaei, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan, Guy W. Dayhoff II, Nicolas G. Bazan, Ángel Serrano-Aroca, Amr El-Demerdash, Yogendra Kumar Mishra, Giorgio Palù, Kazuo Takayama, Adam M. Brufsky, Murtaza M. Tambuwala

Comput. Biol. Medicine, 2021

Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions.

Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia

Briefings Bioinform., 2021

Understanding structural malleability of the SARS-CoV-2 proteins and relation to the comorbidities.

Sagnik Sen, Ashmita Dey, Sanghamitra Bandhyopadhyay, Vladimir N. Uversky, Ujjwal Maulik

Briefings Bioinform., 2021

Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis.

Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

DeepAdd: Protein function prediction from k-mer embedding and additional features.

Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky

Comput. Biol. Chem., 2020

Many-to-One Binding by Intrinsically Disordered Protein Regions.

Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β42.

Orkid Coskuner-Weber, Vladimir N. Uversky

J. Chem. Inf. Model., 2019

2017

Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β₄₂: A New Clustering Algorithm for Disordered Proteins.

Orkid Coskuner, Vladimir N. Uversky

J. Chem. Inf. Model., June, 2017

DisProt 7.0: a major update of the database of disordered proteins.

Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto

Nucleic Acids Res., 2017

2015

Erratum to: Improving protein order-disorder classification using charge-hydropathy plots.

Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker

BMC Bioinform., 2015

2014

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.

Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa

Nucleic Acids Res., 2014

Improving protein order-disorder classification using charge-hydropathy plots.

Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker

BMC Bioinform., 2014

2013

D²P²: database of disordered protein predictions.

Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough

Nucleic Acids Res., 2013

2012

Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder.

Vladimir Vacic, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva

PLoS Comput. Biol., 2012

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.

Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan

Bioinform., 2012

Subclassifying Disordered Proteins by the CH-CDF Plot Method.

Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Intrinsic Protein Disorder and Protein-Protein Interactions.

Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

In-silico prediction of disorder content using hybrid sequence representation.

Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan

BMC Bioinform., 2011

2010

Archaic chaos: intrinsically disordered proteins in Archaea.

Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky

BMC Syst. Biol., 2010

2009

Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins.

Amrita Mohan, Vladimir N. Uversky, Predrag Radivojac

PLoS Comput. Biol., 2009

2008

Malleable Machines in Transcription Regulation: The Mediator Complex.

Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter

PLoS Comput. Biol., 2008

2007

DisProt: the Database of Disordered Proteins.

Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker

Nucleic Acids Res., 2007

Composition Profiler: a tool for discovery and visualization of amino acid composition differences.

Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi

BMC Bioinform., 2007

Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3.

Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Intrinsically Disordered Proteins in Human Diseases.

Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Intrinsically Disordered Proteins: An Update.

A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Intrinsically Disordered Proteins: Predictions and Applications.

A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes.

Chad Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva

PLoS Comput. Biol., 2006

2005

Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study.

Mauro Colafranceschi, Alfredo Colosimo, Joseph P. Zbilut, Vladimir N. Uversky, Alessandro Giuliani

J. Chem. Inf. Model., 2005