Vítor A. P. Martins dos Santos

According to our database, Vítor A. P. Martins dos Santos authored at least 20 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Making PBPK models more reproducible in practice.

Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez

Briefings Bioinform., 2024

Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping.

Zuqi Li, Sonja Katz, Edoardo Saccenti, David W. Fardo, Peter Claes, Vítor A. P. Martins dos Santos, Kristel Van Steen, Gennady V. Roshchupkin

Briefings Bioinform., 2024

2023

Exploring the Impact of Tensions in Stakeholder Norms on Designing for Value Change: The Case of Biosafety in Industrial Biotechnology.

Enrique Asin-Garcia, Zoë Robaey, Linde F. C. Kampers, Vítor A. P. Martins dos Santos

Sci. Eng. Ethics, April, 2023

2022

SALARECON connects the Atlantic salmon genome to growth and feed efficiency.

Maksim V. Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C. J. van Dam, María Suárez-Diez, Fabian Grammes, Róbert Anton Hafþórsson, Wout van Helvoirt, Jasper J. Koehorst, Peter J. Schaap, Yang Jin, Liv Torunn Mydland, Arne B. Gjuvsland, Simen R. Sandve, Vítor A. P. Martins dos Santos, Jon Olav Vik

PLoS Comput. Biol., 2022

Decision support system and outcome prediction in a cohort of patients with necrotizing soft-tissue infections.

Sonja Katz, Jaco Suijker, Christopher Hardt, Martin Bruun Madsen, Annebeth Meij-de Vries, Anouk Pijpe, Steinar Skrede, Ole Hyldegaard, Erik Solligård, Anna Norrby-Teglund, Edoardo Saccenti, Vítor A. P. Martins dos Santos

Int. J. Medical Informatics, 2022

The Digitalization of Bioassays in the Open Research Knowledge Graph.

Jennifer D'Souza, Anita Monteverdi, Muhammad Haris, Marco Anteghini, Kheir Eddine Farfar, Markus Stocker, Vítor A. P. Martins dos Santos, Sören Auer

Proceedings of the Database and Expert Systems Applications, 2022

2021

Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism.

Neeraj Sinha, Evert M. van Schothorst, Guido J. E. K. Hooiveld, Jaap Keijer, Vítor A. P. Martins dos Santos, María Suárez-Diez

BMC Bioinform., 2021

Easy Semantification of Bioassays.

Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer

Proceedings of the AIxIA 2021 - Advances in Artificial Intelligence, 2021

2020

Representing Semantified Biological Assays in the Open Research Knowledge Graph.

Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer

Proceedings of the Digital Libraries at Times of Massive Societal Transition, 2020

SciBERT-based Semantification of Bioassays in the Open Research Knowledge Graph.

Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer

Proceedings of the EKAW 2020 Posters and Demonstrations Session co-located with 22nd International Conference on Knowledge Engineering and Knowledge Management (EKAW 2020), 2020

2018

DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems.

Robert W. Smith, Rik P. van Rosmalen, Vítor A. P. Martins dos Santos, Christian Fleck

BMC Syst. Biol., 2018

SyNDI: synchronous network data integration framework.

Erno Lindfors, Jesse C. J. van Dam, Carolyn M. C. Lam, Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez

BMC Bioinform., 2018

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.

Jasper J. Koehorst, Jesse C. J. van Dam, Edoardo Saccenti, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap

Bioinform., 2018

2016

Efficient Reconstruction of Predictive Consensus Metabolic Network Models.

Ruben G. A. van Heck, Mathias Ganter, Vítor A. P. Martins dos Santos, Jörg Stelling

PLoS Comput. Biol., 2016

2015

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.

Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez

J. Biomed. Semant., 2015

2014

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis.

Jesse C. J. van Dam, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez

BMC Syst. Biol., 2014

2012

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida.

Andreas Kremling, Katharina Pflüger-Grau, Max Chavarría, Jacek Puchalka, Vítor A. P. Martins dos Santos, Victor de Lorenzo

BMC Syst. Biol., 2012

2011

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis.

Matthew A. Oberhardt, Jacek Puchalka, Vítor A. P. Martins dos Santos, Jason A. Papin

PLoS Comput. Biol., 2011

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction.

Kechi Fang, Hansheng Zhao, Changyue Sun, Carolyn M. C. Lam, Suhua Chang, Kunlin Zhang, Gurudutta Panda, Miguel Godinho, Vítor A. P. Martins dos Santos, Jing Wang

BMC Syst. Biol., 2011

2008

Genome-Scale Reconstruction and Analysis of the <i>Pseudomonas putid</i>a KT2440 Metabolic Network Facilitates Applications in Biotechnology.

Jacek Puchalka, Matthew A. Oberhardt, Miguel Godinho, Agata Bielecka, Daniela Regenhardt, Kenneth N. Timmis, Jason A. Papin, Vítor A. P. Martins dos Santos

PLoS Comput. Biol., 2008