Vipin Sachdeva

According to our database, Vipin Sachdeva authored at least 31 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs.

Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the 32nd International Conference on Field-Programmable Logic and Applications, 2022

2021

System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations.

Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors.

Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster.

Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva

Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

2020

Efficient Parallel Algorithms for error correction and transcriptome assembly of biological sequences.

Vipin Sachdeva

PhD thesis, 2020

An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs.

Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva

CoRR, 2020

A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics.

Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs.

Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

2019

Fully Integrated On-FPGA Molecular Dynamics Simulations.

Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

CoRR, 2019

Fully integrated FPGA molecular dynamics simulations.

Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the International Conference for High Performance Computing, 2019

Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs.

Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt

Proceedings of the 30th IEEE International Conference on Application-specific Systems, 2019

2017

OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution.

Yu-Hang Tang, Lu Lu, He Li, Constantinos Evangelinos, Leopold Grinberg, Vipin Sachdeva, George E. Karniadakis

CoRR, 2017

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity.

Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan

BMC Bioinform., 2017

OpenCL for HPC with FPGAs: Case study in molecular electrostatics.

Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva, Martin C. Herbordt

Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

2016

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code.

Vipin Sachdeva, Srinivas Aluru, David A. Bader

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

2014

Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly.

Vipin Sachdeva, Chang Sik Kim, Kirk E. Jordan, Martyn D. Winn

Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Exploring HPC-based scientific software as a service using CometCloud.

Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar

Proceedings of the 10th IEEE International Conference on Collaborative Computing: Networking, 2014

K-mer clustering algorithm using a MapReduce approach.

Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Determination of performance characteristics of scientific applications on IBM Blue Gene/Q.

Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein

IBM J. Res. Dev., 2013

2012

Coupling a Basin Modeling and a Seismic Code using MOAB.

Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein

Proceedings of the International Conference on Computational Science, 2012

Enabling High-Performance Computing as a Service.

Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James C. Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler

Computer, 2012

Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation.

Timothy J. Tautges, Jason Kraftcheck, Nathan Bertram, Vipin Sachdeva, John Magerlein

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

2011

p_2Matlab: Productive Parallel Matlab for the Exascale.

Vipin Sachdeva

Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010

Evaluating Cell/B.E software cache for ClustalW.

Vipin Sachdeva, Michael Kistler, David A. Bader

Proceedings of the International Symposium on Circuits and Systems (ISCAS 2010), May 30, 2010

Enabling Bioinformatics Algorithms on the Cell/B.E. Processor.

Vipin Sachdeva, Michael Kistler, Tzy-Hwa Kathy Tzeng

Proceedings of the Scientific Computing with Multicore and Accelerators., 2010

2009

Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures.

Vipin Sachdeva, Douglas M. Freimuth, Chris Mueller

Proceedings of the Computational Science, 2009

2008

Exploring the viability of the Cell Broadband Engine for bioinformatics applications.

Vipin Sachdeva, Michael Kistler, Evan Speight, Tzy-Hwa Kathy Tzeng

Parallel Comput., 2008

2007

Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture.

Vipin Sachdeva, Evan Speight, Mark W. Stephenson, Lei Chen

Proceedings of the IEEE 10th International Symposium on Workload Characterization, 2007

2006

Poster reception - Pairwise alignments on the cell processor.

Vipin Sachdeva, Michael Kistler, Evan Speight

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

2005

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system.

David A. Bader, Vipin Sachdeva

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic.

David A. Bader, Vipin Sachdeva

Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, 2005