Vinhthuy T. Phan

According to our database, Vinhthuy T. Phan authored at least 56 papers between 2001 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Enhancing Student Performance Prediction In CS1 Via In-Class Coding.

Eric Hicks, Vinhthuy Phan, Kriangsiri Malasri

Proceedings of the 56th ACM Technical Symposium on Computer Science Education V. 1, 2025

In-class Coding Exercises As A Mechanism To Inform Early Intervention In Programming Courses.

Eric Hicks, Vinhthuy Phan

Proceedings of the 56th ACM Technical Symposium on Computer Science Education V. 1, 2025

2023

A Cloud-Based Technology for Conducting In-class Exercises in Data Science and Machine Learning Courses.

Kritish Pahi, Vinhthuy Phan

Proceedings of the 54th ACM Technical Symposium on Computer Science Education, Volume 1, 2023

A Practical Strategy for Training Graduate CS Teaching Assistants to Provide Effective Feedback.

Alina Zaman, Amy Cook, Vinhthuy Phan, Alistair Windsor

Proceedings of the 2023 Conference on Innovation and Technology in Computer Science Education V. 1, 2023

2022

Representing bacteria with unique genomic signatures.

Diem-Trang Pham, Vinhthuy Phan

Frontiers Big Data, 2022

Enabling In-Class Peer Feedback on Introductory Computer Science Coding Exercises.

Alina Zaman, Vinhthuy Phan, Amy Cook

Proceedings of the SIGCSE 2022: The 53rd ACM Technical Symposium on Computer Science Education, 2022

Keep It Relevant! Using In-class Exercises to Predict Weekly Performance in CS1.

Eric Hicks, Amy Cook, Kriangsiri Malasri, Alina Zaman, Vinhthuy Phan

Proceedings of the SIGCSE 2022: The 53rd ACM Technical Symposium on Computer Science Education, 2022

Try That Again! How a Second Attempt on In-Class Coding Problems Benefits Students in CS1.

Amy Cook, Alina Zaman, Eric Hicks, Kriangsiri Malasri, Vinhthuy Phan

Proceedings of the SIGCSE 2022: The 53rd ACM Technical Symposium on Computer Science Education, 2022

Improving TA Feedback on In-Class Coding Assignments for Introductory Computer Science.

Amy Cook, Vinhthuy Phan, Alistair Windsor

Proceedings of the ITiCSE 2022: Innovation and Technology in Computer Science Education, Dublin, Ireland, July 8, 2022

2020

Analysis of Short-read Aligners using Genome Sequence Complexity.

Quang Tran, Nam Sy Vo, Eric Hicks, Tin Chi Nguyen, Vinhthuy Phan

Proceedings of the 12th International Conference on Knowledge and Systems Engineering, 2020

Active Learning: The Almost Silver Bullet.

Eric Hicks, Quang Tran, Kriangsiri Malasri, Nam Sy Vo, Vinhthuy Phan

Proceedings of the 12th International Conference on Knowledge and Systems Engineering, 2020

2019

icHET: interactive visualization of cytoplasmic heteroplasmy.

Vinhthuy Phan, Diem-Trang Pham, Caroline Melton, Adam J. Ramsey, Bernie J. Daigle Jr., Jennifer R. Mandel

Bioinform., 2019

2018

Leveraging known genomic variants to improve detection of variants, especially close-by Indels.

Nam S. Vo, Vinhthuy Phan

Bioinform., 2018

Code4Brownies: an active learning solution for teaching programming and problem solving in the classroom.

Vinhthuy Phan, Eric Hicks

Proceedings of the 23rd Annual ACM Conference on Innovation and Technology in Computer Science Education, 2018

2017

An accurate and fast alignment-free method for profiling microbial communities.

Diem-Trang Pham, Shanshan Gao, Vinhthuy Phan

J. Bioinform. Comput. Biol., 2017

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities.

Quang Tran, Diem-Trang Pham, Vinhthuy Phan

BMC Bioinform., 2017

2016

Analysis of optimal alignments unfolds aligners' bias in existing variant profiles.

Quang Tran, Shanshan Gao, Vinhthuy Phan

BMC Bioinform., 2016

2015

Improving variant calling by incorporating known genetic variants into read alignment.

Nam S. Vo, Vinhthuy Phan

BMC Bioinform., December, 2015

A linear model for predicting performance of short-read aligners using genome complexity.

Quang Tran, Shanshan Gao, Nam S. Vo, Vinhthuy Phan

BMC Bioinform., December, 2015

How genome complexity can explain the difficulty of aligning reads to genomes.

Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S. Vo

BMC Bioinform., December, 2015

Alignment-free methods for metagenomic profiling.

Shanshan Gao, Diem-Trang Pham, Vinhthuy Phan

BMC Bioinform., December, 2015

2014

An integrated approach for SNP calling based on population of genomes.

Nam S. Vo, Quang Tran, Vinhthuy Phan

BMC Bioinform., 2014

Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response.

Nam S. Vo, Vinhthuy Phan

BMC Bioinform., 2014

Exploiting the bootstrap method to analyze patterns of gene expression.

Nam S. Vo, Vinhthuy Phan

BMC Bioinform., 2014

Alignment of short reads to multiple genomes using hashing.

Quang Tran, Vinhthuy Phan

BMC Bioinform., 2014

Determining gene response patterns of time series gene expression data using R.

Kevin L. O'kello, Vinhthuy Phan

BMC Bioinform., 2014

How genome complexity can explain the hardness of aligning reads to genomes.

Vinhthuy T. Phan, Shanshan Gao, Quang Tran, Nam S. Vo

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013

Using partially ordered sets to represent and predict true patterns of gene response to treatments.

Nam S. Vo, Vinhthuy Phan

BMC Bioinform., 2013

Exploiting Dependencies of Patterns in Gene Expression Analysis Using Pairwise Comparisons.

Nam S. Vo, Vinhthuy Phan

Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

A randomized algorithm for aligning DNA sequences to reference genomes.

Nam S. Vo, Quang Tran, Nobal B. Niraula, Vinhthuy Phan

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012

Predicting possible directed-graph patterns of gene expressions in studies involving multiple treatments.

Nam S. Vo, Vinhthuy Phan, Thomas R. Sutter

Proceedings of the ACM International Conference on Bioinformatics, 2012

<i>Pattern analysis</i>: a web-based tool for analyzing response patterns in low-replication, many-treatment gene expression data.

Nam S. Vo, Vinhthuy Phan

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets.

Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W. Berry, Ramin Homayouni

BMC Bioinform., 2011

mDAG: a web-based tool for analyzing microarray data with multiple treatments.

Vinhthuy T. Phan, Nam S. Vo, Thomas R. Sutter

BMC Bioinform., 2011

2010

DNA-Based Indexing.

Max H. Garzon, Kiran C. Bobba, Andrew Neel, Vinhthuy Phan

Int. J. Nanotechnol. Mol. Comput., 2010

Synthetic gene design with a large number of hidden stops.

Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong

Int. J. Data Min. Bioinform., 2010

Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases.

Vinhthuy Phan, Allen Thomas, Kriangsiri Malasri, Carrie Hayes Sutter

Int. J. Bioinform. Res. Appl., 2010

2009

On codeword design in metric DNA spaces.

Vinhthuy T. Phan, Max H. Garzon

Nat. Comput., 2009

Analyzing microarray Data with Transitive Directed Acyclic Graphs.

Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Shirlean Goodwin, Sridevi Bodreddigari, Thomas R. Sutter

J. Bioinform. Comput. Biol., 2009

Optimal DNA Codes for Computing and Self-Assembly.

Max H. Garzon, Vinhthuy Phan, Andrew Neel

Int. J. Nanotechnol. Mol. Comput., 2009

Motif Tool Manager: a web-based platform for motif discovery.

Vinhthuy Phan

BMC Bioinform., 2009

DNA Chips for Species Identification and Biological Phylogenies.

Max H. Garzon, Tit-Yee Wong, Vinhthuy T. Phan

Proceedings of the DNA Computing and Molecular Programming, 15th International Conference, 2009

2008

BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data.

Vinhthuy Phan, Kriangsiri Malasri

Int. J. Comput. Biol. Drug Des., 2008

Motif Tool Manager: a web-based framework for motif discovery.

Vinhthuy Phan, Nicholas A. Furlotte

Bioinform., 2008

Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies.

Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Thomas R. Sutter

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Synthetic Gene Design with a Large Number of Hidden Stop Codons.

Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

How to Build a System that Manages Bioinformatics Content.

Vinhthuy T. Phan, Allen Thomas

Proceedings of the International Conference on Enterprise Information Systems and Web Technologies, 2007

Stability of RNA Structural Motifs and its Influence on Editing Efficiency by ADARS.

Vinhthuy T. Phan, Allen Thomas, Carrie Hayes Sutter

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

In Search of Optimal Codes for DNA Computing.

Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel

Proceedings of the DNA Computing, 12th International Meeting on DNA Computing, 2006

"Reasoning" and "Talking" DNA: Can DNA Understand English?

Kiranchand V. Bobba, Andrew Neel, Vinhthuy T. Phan, Max H. Garzon

Proceedings of the DNA Computing, 12th International Meeting on DNA Computing, 2006

2005

Sensitivity and Capacity of Microarray Encodings.

Max H. Garzon, Vinhthuy T. Phan, Kiran C. Bobba, Raghuver Kontham

Proceedings of the DNA Computing, 11th International Workshop on DNA Computing, 2005

2004

An Improved Time-Sensitive Metaheuristic Framework for Combinatorial Optimization.

Vinhthuy T. Phan, Steven Skiena

Proceedings of the Experimental and Efficient Algorithms, Third International Workshop, 2004

The Capacity of DNA for Information Encoding.

Vinhthuy T. Phan, Max H. Garzon

Proceedings of the DNA Computing, 10th International Workshop on DNA Computing, 2004

2003

A Model for Analyzing Black-Box Optimization.

Vinhthuy T. Phan, Steven Skiena, Pavel Sumazin

Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003

2002

A Time-Sensitive System for Black-Box Combinatorial Optimization.

Vinhthuy T. Phan, Pavel Sumazin, Steven Skiena

Proceedings of the Algorithm Engineering and Experiments, 4th International Workshop, 2002

2001

Dealing with errors in interactive sequencing by hybridization.

Vinhthuy T. Phan, Steven Skiena

Bioinform., 2001