Vincent Lacroix

According to our database, Vincent Lacroix authored at least 24 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

De novo analysis of splicing from RNA-seq data: models, algorithms and applications.

Vincent Lacroix

, 2023

2018

Modelling Dynamic Data Structures with the B Method.

Frédéric Badeau, Vincent Lacroix, Vincent Monfort, Laurent Voisin, Christophe Métayer

Proceedings of the Abstract State Machines, Alloy, B, TLA, VDM, and Z, 2018

2017

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.

Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Algorithms Mol. Biol., 2017

2015

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs.

Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot

Algorithms Mol. Biol., 2015

2014

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.

Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot

Bioinform., 2014

Navigating in a Sea of Repeats in RNA-seq without Drowning.

Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

2013

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark F. Rogers, Kristina Ibáñez, Cesar Boullosa, Eduardo Andrés León, Asa Ben-Hur, Alfonso Valencia

Nucleic Acids Res., 2013

Telling Stories Fast.

Michele Borassi, Pierluigi Crescenzi, Vincent Lacroix, Andrea Marino, Marie-France Sagot, Paulo Vieira Milreu

Proceedings of the Experimental Algorithms, 12th International Symposium, 2013

A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data.

Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

2012

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.

Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie

Theor. Comput. Sci., 2012

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.

Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix

BMC Bioinform., 2012

Efficient Bubble Enumeration in Directed Graphs.

Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot

Proceedings of the String Processing and Information Retrieval, 2012

Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone.

Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot

Proceedings of the Combinatorial Optimization - Second International Symposium, 2012

2010

Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.

Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Identifying SNPs without a Reference Genome by Comparing Raw Reads.

Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix

Proceedings of the String Processing and Information Retrieval, 2010

2009

Assessing the Exceptionality of Coloured Motifs in Networks.

Sophie Schbath, Vincent Lacroix, Marie-France Sagot

EURASIP J. Bioinform. Syst. Biol., 2009

Modes and cuts in metabolic networks: Complexity and algorithms.

Vicente Acuña, Flavio Chierichetti, Vincent Lacroix, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie

Biosyst., 2009

2008

An Introduction to Metabolic Networks and Their Structural Analysis.

Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Exact Transcriptome Reconstruction from Short Sequence Reads.

Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

Identification de motifs dans les réseaux métaboliques. (Motif identification in metabolic networks).

Vincent Lacroix

PhD thesis, 2007

Metabolic network visualization eliminating node redundance and preserving metabolic pathways.

Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan

BMC Syst. Biol., 2007

2006

Motif Search in Graphs: Application to Metabolic Networks.

Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot

IEEE ACM Trans. Comput. Biol. Bioinform., 2006

Metabolic network visualization using constraint planar graph drawing algorithm.

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Proceedings of the 10th International Conference on Information Visualisation, 2006

2005

Reaction Motifs in Metabolic Networks.

Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot

Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005