Vincent J. Carey

According to our database, Vincent J. Carey authored at least 24 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.

Michele Gentili, Kimberly Glass, Enrico Maiorino, Brian D. Hobbs, Zhonghui Xu, Peter J. Castaldi, Michael H. Cho, Craig P. Hersh, Dandi Qiao, Jarrett D. Morrow, Vincent J. Carey, John Platig, Edwin K. Silverman

PLoS Comput. Biol., 2024

2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron

PLoS Comput. Biol., 2023

2021

Toward a gold standard for benchmarking gene set enrichment analysis.

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron

Briefings Bioinform., 2021

2019

BiocPkgTools: Toolkit for mining the<i> Bioconductor</i> package ecosystem.

Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis

F1000Research, 2019

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.

Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent J. Carey

F1000Research, 2019

deconvSeq: deconvolution of cell mixture distribution in sequencing data.

Rose Du, Vincent J. Carey, Scott T. Weiss

Bioinform., 2019

2017

ogttMetrics: Data structures and algorithms for oral glucose tolerance tests.

Benjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey

F1000Research, 2017

2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016

2014

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.

Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan

Bioinform., 2014

2013

Software for Computing and Annotating Genomic Ranges.

Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey

PLoS Comput. Biol., 2013

2011

R Language.

Robert Gentleman, Wolfgang Huber, Vincent J. Carey

Proceedings of the International Encyclopedia of Statistical Science, 2011

Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes.

Jen-hwa Chu, Ross Lazarus, Vincent J. Carey, Benjamin A. Raby

BMC Syst. Biol., 2011

2009

A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism.

Jen-hwa Chu, Scott T. Weiss, Vincent J. Carey, Benjamin A. Raby

BMC Syst. Biol., 2009

Platform dependence of inference on gene-wise and gene-set involvement in human lung development.

Rose Du, Kelan Tantisira, Vincent J. Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T. Kho, Barbara J. Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J. Mariani, J. Steven Leeder, Scott T. Weiss

BMC Bioinform., 2009

rtracklayer: an R package for interfacing with genome browsers.

Michael F. Lawrence, Robert Gentleman, Vincent J. Carey

Bioinform., 2009

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.

Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby

Bioinform., 2009

Power enhancement via multivariate outlier testing with gene expression arrays.

Adam L. Asare, Zhong Gao, Vincent J. Carey, Richard Wang, Vicki Seyfert-Margolis

Bioinform., 2009

Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor.

Vincent J. Carey, Robert Gentleman

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

SGDI: System for Genomic Data Integration.

Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy

Proceedings of the Biocomputing 2008, 2008

2007

Machine Learning and Its Applications to Biology.

Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici

PLoS Comput. Biol., 2007

Graphs in molecular biology.

Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman

BMC Bioinform., 2007

GGtools: analysis of genetics of gene expression in bioconductor.

Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman

Bioinform., 2007

2005

Network structures and algorithms in Bioconductor.

Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman

Bioinform., 2005

2003

An extensible application for assembling annotation for genomic data.

Jianhua Zhang, Vincent J. Carey, Robert Gentleman

Bioinform., 2003