Vijini Mallawaarachchi

According to our database, Vijini Mallawaarachchi authored at least 22 papers between 2017 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Koverage: Read-coverage analysis for massive (meta)genomics datasets.

Michael J. Roach, Bradley J. Hart, Sarah J. Beecroft, Bhavya Nalagampalli Papudeshi, Laura K. Inglis, Susanna R. Grigson, Vijini Mallawaarachchi, George Bouras, Robert A. Edwards

J. Open Source Softw., April, 2024

Dnaapler: A tool to reorient circular microbial genomes.

George Bouras, Susanna R. Grigson, Bhavya Nalagampalli Papudeshi, Vijini Mallawaarachchi, Michael J. Roach

J. Open Source Softw., February, 2024

Solving genomic puzzles: computational methods for metagenomic binning.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards

Briefings Bioinform., 2024

Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning.

Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan

Proceedings of the Twelfth International Conference on Learning Representations, 2024

2023

Phables: from fragmented assemblies to high-quality bacteriophage genomes.

Vijini Mallawaarachchi, Michael J. Roach, Przemyslaw Decewicz, Bhavya Nalagampalli Papudeshi, Sarah K. Giles, Susanna R. Grigson, George Bouras, Ryan D. Hesse, Laura K. Inglis, Abbey L. K. Hutton, Elizabeth A. Dinsdale, Robert A. Edwards

Bioinform., October, 2023

2022

Ten simple rules and a template for creating workflows-as-applications.

Michael J. Roach, N. Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Nalagampalli Papudeshi, Scott A. Handley, C. Titus Brown, Nathan S. Watson-Haigh, Robert A. Edwards

PLoS Comput. Biol., December, 2022

Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.

Vijini Mallawaarachchi, Yu Lin

J. Comput. Biol., 2022

CH-Bin: A convex hull based approach for binning metagenomic contigs.

Sunera Chandrasiri, Thumula Perera, Anjala Dilhara, Indika Perera, Vijini Mallawaarachchi

Comput. Biol. Chem., 2022

MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs.

Vijini Mallawaarachchi, Yu Lin

Proceedings of the Research in Computational Molecular Biology, 2022

RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning.

Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin

Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021

Change Detection and Notification of Web Pages: A Survey.

Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Madhushanka, Eranga Heshan, Dulani Meedeniya, Sampath Jayarathna

ACM Comput. Surv., 2021

Improving metagenomic binning results with overlapped bins using assembly graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Algorithms Mol. Biol., 2021

2020

Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation.

Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi

Int. J. Online Biomed. Eng., 2020

MetaBCC-LR: metagenomics binning by coverage and composition for long reads.

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin

Bioinform., 2020

GraphBin: refined binning of metagenomic contigs using assembly graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Bioinform., 2020

GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

2019

Change Detection and Notification of Webpages: A Survey.

Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna

CoRR, 2019

2018

Experiential Learning in Bioinformatics - Learner Support for Complex Workflow Modelling and Analysis.

Vijini Mallawaarachchi, Anuradha Wickaramarachchi, Anuradha Weliwita, Indika Perera, Dulani Meedeniya

Int. J. Emerg. Technol. Learn., 2018

Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows.

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita

Proceedings of the IEEE International Conference on Teaching, 2018

Random Forest Classifier based Scheduler Optimization for Search Engine Web Crawlers.

Lakmal Meegahapola, Vijini Mallawaarachchi, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna

Proceedings of the 7th International Conference on Software and Computer Applications, 2018

Efficient Bioinformatics Computations through GPU Accelerated Web Services.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya

Proceedings of the 2018 2nd International Conference on Algorithms, Computing and Systems, 2018

2017

Optimizing change detection in distributed digital collections: An architectural perspective of change detection.

Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Vijini Mallawaarachchi, Dulani Meedeniya, Sampath Jayarathna

Proceedings of the 18th IEEE/ACIS International Conference on Software Engineering, 2017