Vasilis J. Promponas

Orcid: 0000-0003-3352-4831

Affiliations:
  • University of Cyprus, Nicosia, Cyprus


According to our database1, Vasilis J. Promponas authored at least 36 papers between 1998 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
CGG toolkit: Software components for computational genomics.
PLoS Comput. Biol., November, 2023

2022
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Nucleic Acids Res., 2022

Solving the Protein Secondary Structure Prediction Problem With the Hessian Free Optimization Algorithm.
IEEE Access, 2022

2020
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.
Nucleic Acids Res., 2020

DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res., 2020

The bioinformatics wealth of nations.
Bioinform., 2020

Disentangling the complexity of low complexity proteins.
Briefings Bioinform., 2020

2019
Establishment of computational biology in Greece and Cyprus: Past, present, and future.
PLoS Comput. Biol., 2019

2018
Convolutional Neural Networks in Combination with Support Vector Machines for Complex Sequential Data Classification.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2018, 2018

2016
Training Bidirectional Recurrent Neural Network Architectures with the Scaled Conjugate Gradient Algorithm.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2016, 2016

2015
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery.
Bioinform., 2015

LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences.
Bioinform., 2015

2014
Guest Editorial: Computational Solutions to Large-Scale Data Management and Analysis in Translational and Personalized Medicine.
IEEE J. Biomed. Health Informatics, 2014

Editorial: Intelligent Biomedical Systems.
Int. J. Artif. Intell. Tools, 2014

Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms.
IEEE Des. Test, 2014

BioTextQuest<sup>+</sup>: a knowledge integration platform for literature mining and concept discovery.
Bioinform., 2014

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey.
Briefings Bioinform., 2014

2013
FPGA-based hardware acceleration for local complexity analysis of massive genomic data.
Integr., 2013

GPU technology as a platform for accelerating local complexity analysis of protein sequences.
Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012
A Comparative Study on Filtering Protein Secondary Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

LaTcOm: a web server for visualizing rare codon clusters in coding sequences.
Bioinform., 2012

Towards systolic hardware acceleration for local complexity analysis of massive genomic data.
Proceedings of the Great Lakes Symposium on VLSI 2012, 2012

Sequence features of Compositionally Biased regions in three dimensional protein structures.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

A workflow system for virtual screening in cancer chemoprevention.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

Opportunities from the use of FPGAs as platforms for bioinformatics algorithms.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

Open source workflow systems in life sciences informatics.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011
BioTextQuest: a web-based biomedical text mining suite for concept discovery.
Bioinform., 2011

2010
Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study.
Biosyst., 2010

Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance?
Proceedings of the Artificial Intelligence Applications and Innovations, 2010

2008
Clustering of biological time series by cepstral coefficients based distances.
Pattern Recognit., 2008

2004
PRED-GPCR: GPCR recognition and family classification server.
Nucleic Acids Res., 2004

2003
GeneViTo: Visualizing gene-product functional and structural features in genomic datasets.
BMC Bioinform., 2003

Evaluation of annotation strategies using an entire genome sequence.
Bioinform., 2003

2000
CAST: an iterative algorithm for the complexity analysis of sequence tracts.
Bioinform., 2000

1998
CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods.
Silico Biol., 1998

A web server to locate periodicities in a sequence.
Bioinform., 1998


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