Vamsi Kundeti

J. Comput. Biol., 2014

2013

A Structure Based Algorithm for Improving Motifs Prediction.

[BibT_eX]

[DOI]

Sudipta Pathak

Vamsi Krishna Kundeti

Martin R. Schiller

Proceedings of the Pattern Recognition in Bioinformatics, 2013

2012

Self assembly of rectangular shapes on concentration programming and probabilistic tile assembly models.

[BibT_eX]

[DOI]

Nat. Comput., 2012

An Efficient Algorithm for Chinese Postman Walk on Bi-Directed de Bruijn Graphs.

[BibT_eX]

[DOI]

Discret. Math. Algorithms Appl., 2012

2011

Efficient algorithms for self assembling non-rectangular nano structures.

[BibT_eX]

[DOI]

Nat. Comput., 2011

Efficient out-of-core sorting algorithms for the Parallel Disks Model.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2011

PMS5: an efficient exact algorithm for the (l, d)-motif finding problem.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

Workshop: Efficient sequential and parallel algorithms for sequence assembly.

[BibT_eX]

[DOI]

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

Fast algorithms for placing large entries along the diagonal of a sparse matrix.

[BibT_eX]

[DOI]

J. Comput. Appl. Math., 2010

On the Hardness of the Border Length Minimization Problem on a Rectangular Array.

[BibT_eX]

[DOI]

Int. J. Found. Comput. Sci., 2010

Efficient Parallel and Out of Core Algorithms for Constructing Large Bi-directed de Bruijn Graphs

[BibT_eX]

[DOI]

CoRR, 2010

MimoSA: a system for minimotif annotation.

[BibT_eX]

[DOI]

Martin R. Schiller

BMC Bioinform., 2010

Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.

[BibT_eX]

[DOI]

Matthew Vaughn

Vishal Thapar

BMC Bioinform., 2010

Randomized Self Assembly of Rectangular Nano Structures.

[BibT_eX]

[DOI]

Proceedings of the DNA Computing and Molecular Programming - 16th International Conference, 2010

On the border length minimization problem (BLMP) on a square array.

[BibT_eX]

[DOI]

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Minimotif miner 2nd release: a database and web system for motif search.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2009

Spectrum Based Techniques for Graph Isomorphism.

[BibT_eX]

[DOI]

Int. J. Found. Comput. Sci., 2009

A Simplified Proof For The Application Of Freivalds' Technique to Verify Matrix Multiplication

[BibT_eX]

[DOI]

CoRR, 2009

Efficient Algorithms for Self Assembling Triangular and Other Nano Structures.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

Generalized algorithms for generating balanced modulation codes in protein-based volumetric memories.

[BibT_eX]

[DOI]

Robert Birge

Proceedings of the IEEE Congress on Evolutionary Computation, 2009

On the Hardness of the Border Length Minimization Problem.

[BibT_eX]

[DOI]

Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009

2008

Extending the Four Russian Algorithm to Compute the Edit Script in Linear Space.

[BibT_eX]

[DOI]

Proceedings of the Computational Science, 2008

Efficient PDM Sorting Algorithms.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing, 2008

A local structural alignment algorithm with Variable Length Alignment Fragment Pairs.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

An efficient digital circuit for implementing Sequence Alignment algorithm in an extended processor.

[BibT_eX]

[DOI]

Yunsi Fei