Valentina Boeva

According to our database, Valentina Boeva authored at least 21 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Feature Clock: High-Dimensional Effects in Two-Dimensional Plots.

Olga Ovcharenko, Rita Sevastjanova, Valentina Boeva

CoRR, 2024

scTree: Discovering Cellular Hierarchies in the Presence of Batch Effects in scRNA-seq Data.

Moritz Vandenhirtz, Florian Barkmann, Laura Manduchi, Julia E. Vogt, Valentina Boeva

CoRR, 2024

Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks.

Andrey Ignatov, Josephine Yates, Valentina Boeva

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2022

Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis.

Josephine Yates, Valentina Boeva

Briefings Bioinform., 2022

2021

CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes.

Lélia Polit, Gwenneg Kerdivel, Sebastian Gregoricchio, Michela Esposito, Christel Guillouf, Valentina Boeva

BMC Bioinform., 2021

2018

QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.

Paul Deveau, Leo Colmet Daage, Derek Oldridge, Virginie Bernard, Angela Bellini, Mathieu Chicard, Nathalie Clement, Eve Lapouble, Valerie Combaret, Anne Boland, Vincent Meyer, Jean-Francois Deleuze, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Olivier Delattre, John M. Maris, Gudrun Schleiermacher, Valentina Boeva

Bioinform., 2018

2016

Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages.

Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet

R J., 2016

SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.

Daria Iakovishina, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Mireille Régnier, Valentina Boeva

Bioinform., 2016

RNF: a general framework to evaluate NGS read mappers.

Karel Brinda, Valentina Boeva, Gregory Kucherov

Bioinform., 2016

2014

SegAnnDB: interactive Web-based genomic segmentation.

Toby Dylan Hocking, Valentina Boeva, Guillem Rigaill, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Wilfrid Richer, Franck Bourdeaut, Miyuki Suguro, Masao Seto, Francis R. Bach, Jean-Philippe Vert

Bioinform., 2014

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.

Valentina Boeva, Tatiana G. Popova, Maxime Lienard, Sebastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes

Bioinform., 2014

2013

Learning smoothing models of copy number profiles using breakpoint annotations.

Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis R. Bach, Jean-Philippe Vert

BMC Bioinform., 2013

HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.

Haitham Ashoor, Aurélie Hérault, Aurélie Kamoun, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot, Valentina Boeva

Bioinform., 2013

2012

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.

Valentina Boeva, Tatiana G. Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot

Bioinform., 2012

Nebula - a web-server for advanced ChIP-seq data analysis.

Valentina Boeva, Alban Lermine, Camille Barette, Christel Guillouf, Emmanuel Barillot

Bioinform., 2012

2011

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.

Valentina Boeva, Andrei Yu. Zinovyev, Kevin Bleakley, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot

Bioinform., 2011

2010

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data.

Bruno Zeitouni, Valentina Boeva, Isabelle Janoueix-Lerosey, Sophie Loeillet, Patricia Legoix-né, Alain Nicolas, Olivier Delattre, Emmanuel Barillot

Bioinform., 2010

Deep and wide digging for binding motifs in ChIP-Seq data.

Ivan V. Kulakovskiy, Valentina Boeva, Alexander V. Favorov, Vsevolod J. Makeev

Bioinform., 2010

2007

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of <i>cis</i>-regulatory modules.

Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A. Roytberg, Vsevolod J. Makeev

Algorithms Mol. Biol., 2007

2006

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.

Valentina Boeva, Mireille Régnier, Dmitri A. Papatsenko, Vsevolod J. Makeev

Bioinform., 2006

2005

Assessing the Significance of Sets of Words.

Valentina Boeva, Julien Clément, Mireille Régnier, Mathias Vandenbogaert

Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005