Vahid Jalili

According to our database, Vahid Jalili authored at least 14 papers between 2015 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs

Nucleic Acids Res., 2022

2021

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.

Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn A. Grüning, Jeremy Goecks

PLoS Comput. Biol., 2021

2020

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko

Nucleic Acids Res., 2020

Cloud bursting galaxy: federated identity and access management.

Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks

Bioinform., 2020

2019

Next Generation Indexing for Genomic Intervals.

Vahid Jalili, Matteo Matteucci, Jeremy Goecks, Yashar Deldjoo, Stefano Ceri

IEEE Trans. Knowl. Data Eng., 2019

2018

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg

Nucleic Acids Res., 2018

Federated Galaxy: Biomedical Computing at the Frontier.

Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks

Proceedings of the 11th IEEE International Conference on Cloud Computing, 2018

2017

Indexing Next-Generation Sequencing data.

Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri

Inf. Sci., 2017

Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes.

Vahid Jalili

CoRR, 2017

Explorative visual analytics on interval-based genomic data and their metadata.

Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri

BMC Bioinform., 2017

MuSERA: Multiple Sample Enriched Region Assessment.

Vahid Jalili, Matteo Matteucci, Marco J. Morelli, Marco Masseroli

Briefings Bioinform., 2017

2016

Efficient data structures for cross-samples inferences on genomic data.

Vahid Jalili

PhD thesis, 2016

2015

GenoMetric Query Language: a novel approach to large-scale genomic data management.

Marco Masseroli, Pietro Pinoli, Francesco Venco, Abdulrahman Kaitoua, Vahid Jalili, Fernando Palluzzi, Heiko Müller, Stefano Ceri

Bioinform., 2015

Using combined evidence from replicates to evaluate ChIP-seq peaks.

Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli

Bioinform., 2015