Vahan Simonyan

According to our database, Vahan Simonyan authored at least 13 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Building the foundation for a modern patient-partnered infrastructure to study temporomandibular disorders.

Laura Elisabeth Gressler, Terrie Cowley, Marti Velezis, Suvekshya Aryal, Deanne Clare, John W. Kusiak, Allen W. Cowley, Art Sedrakyan, Danica Marinac-Dabic, Michelle Reardon, Lisa Schmidt, Jennifer Ginsburg Feldman, Vincent Difabio, Suzie Bergman, Vahan Simonyan, Yelena Yesha, Ingrid Vasiliu-Feltes, Justin Durham, Andrew I. Steen, Phillip Woods, Flavia P. Kapos, Nilsa Loyo-Berrios

Frontiers Digit. Health, March, 2023

2017

Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices.

Scott Goldweber, Jamal Theodore, John Torcivia-Rodriguez, Vahan Simonyan, Raja Mazumder

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A new and updated resource for codon usage tables.

John Athey, Aikaterini Alexaki, Ekaterina Osipova, Alexandre Rostovtsev, Luis V. Santana-Quintero, Upendra Katneni, Vahan Simonyan, Chava Kimchi-Sarfaty

BMC Bioinform., 2017

2016

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.

Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William J. Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis V. Santana-Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko, John Torcivia-Rodriguez, Alin Voskanian, Quan Wan, Jing Wang, Tsung-Jung Wu, Carolyn Wilson, Raja Mazumder

Database J. Biol. Databases Curation, 2016

2015

Advantages of distributed and parallel algorithms that leverage Cloud Computing platforms for large-scale genome assembly.

Priti Kumari, Raja Mazumder, Vahan Simonyan, Konstantinos Krampis

F1000Research, 2015

2014

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.

Charles Cole, Konstantinos Krampis, Konstantinos Karagiannis, Jonas S. Almeida, William J. Faison, Mona Motwani, Quan Wan, Anton Golikov, Yang Pan, Vahan Simonyan, Raja Mazumder

BMC Bioinform., 2014

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE).

Tsung-Jung Wu, Amirhossein Shamsaddini, Yang Pan, Krista Smith, Daniel J. Crichton, Vahan Simonyan, Raja Mazumder

Database J. Biol. Databases Curation, 2014

2013

Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes.

Phuc Vinh Nguyen Lam, Radoslav Goldman, Konstantinos Karagiannis, Tejas Narsule, Vahan Simonyan, Valerii Soika, Raja Mazumder

Genom. Proteom. Bioinform., 2013

SNVDis: A Proteome-wide Analysis Service for Evaluating nsSNVs in Protein Functional Sites and Pathways.

Konstantinos Karagiannis, Vahan Simonyan, Raja Mazumder

Genom. Proteom. Bioinform., 2013

2011

PubChem3D: a new resource for scientists.

Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

J. Cheminformatics, 2011

2005

CDD: a Conserved Domain Database for protein classification.

Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant

Nucleic Acids Res., 2005

2003

CDD: a curated Entrez database of conserved domain alignments.

Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003

MMDB: Entrez's 3D-structure database.

Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003