Ursula Kummer

According to our database, Ursula Kummer authored at least 18 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities.

Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

Stochastic dynamics of Type-I interferon responses.

Benjamin D. Maier, Luis U. Aguilera, Sven Sahle, Pascal Mutz, Priyata Kalra, Christopher Dächert, Ralf Bartenschlager, Marco Binder, Ursula Kummer

PLoS Comput. Biol., October, 2022

2021

Impact of explicit area scaling on kinetic models involving multiple compartments.

Pascal Holzheu, Ruth Großeholz, Ursula Kummer

BMC Bioinform., 2021

2017

A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study.

Luis U. Aguilera, Christoph Zimmer, Ursula Kummer

BMC Syst. Biol., 2017

2013

Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria.

Nadine Veith, Anna Feldman-Salit, Vlad Cojocaru, Stefan Henrich, Ursula Kummer, Rebecca C. Wade

PLoS Comput. Biol., 2013

2012

Simplification of biochemical models: a general approach based on the analysis of the impact of individual species and reactions on the systems dynamics.

Irina Surovtsova, Natalia Simus, Katrin Hübner, Sven Sahle, Ursula Kummer

BMC Syst. Biol., 2012

2009

The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach.

Ann Zahle Andersen, Ana Lúcia Carvalho, Ana Rute Neves, Helena Santos, Ursula Kummer, Lars Folke Olsen

Comput. Biol. Chem., 2009

Accessible methods for the dynamic time-scale decomposition of biochemical systems.

Irina Surovtsova, Natalia Simus, Thomas Lorenz, Artjom König, Sven Sahle, Ursula Kummer

Bioinform., 2009

2008

Information transfer in signaling pathways: A study using coupled simulated and experimental data.

Jürgen Pahle, Anne K. Green, C. Jane Dixon, Ursula Kummer

BMC Bioinform., 2008

SYCAMORE - a systems biology computational analysis and modeling research environment.

Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer

Bioinform., 2008

2007

Usage of Reaction Kinetics Data Stored in Databases - A Modeler's Point of View.

Ursula Kummer

Silico Biol., 2007

2006

COPASI - a COmplex PAthway SImulator.

Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer

Bioinform., 2006

Approaches to complexity reduction in a systems biology research environment (SYCAMORE).

Irina Surovtsova, Sven Sahle, Jürgen Pahle, Ursula Kummer

Proceedings of the Winter Simulation Conference WSC 2006, 2006

Simulation of biochemical networks using COPASI: a complex pathway simulator.

Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes

Proceedings of the Winter Simulation Conference WSC 2006, 2006

2005

A New Time-Dependent Complexity Reduction Method for Biochemical Systems.

Jürgen Zobeley, Dirk Lebiedz, Julia Kammerer, Anton Ishmurzin, Ursula Kummer

Trans. Comp. Sys. Biology, 2005

A new dynamical layout algorithm for complex biochemical reaction networks.

Katja Wegner, Ursula Kummer

BMC Bioinform., 2005

2004

combAlign: A protein sequence comparison algorithm considering recombinations.

Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges, Ursula Kummer

Silico Biol., 2004

2003

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang

Bioinform., 2003