Umit Topaloglu

According to our database, Umit Topaloglu authored at least 36 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Improving Equity in Deep Learning Medical Applications with the Gerchberg-Saxton Algorithm.

Seha Ay, Michael Cardei, Anne-Marie Meyer, Wei Zhang, Umit Topaloglu

J. Heal. Informatics Res., June, 2024

Adapting the open-source Gen3 platform and kubernetes for the NIH HEAL IMPOWR and MIRHIQL clinical trial data commons: Customization, cloud transition, and optimization.

Meredith C. B. Adams, Colin Griffin, Hunter Adams, Stephen Bryant, Robert W. Hurley, Umit Topaloglu

J. Biomed. Informatics, 2024

2023

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).

Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu

J. Am. Medical Informatics Assoc., November, 2023

2022

A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images.

Qing Lyu, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang, Christopher T. Whitlow

Patterns, 2022

VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern.

Hongyu Zhao, Kun Han, Chao Gao, Vithal Madhira, Umit Topaloglu, Yong Lu, Guangxu Jin

Bioinform., 2022

2021

In the Pursuit of Privacy: The Promises and Predicaments of Federated Learning in Healthcare.

Mustafa Y. Topaloglu, Elisabeth M. Morrell, Suraj Rajendran, Umit Topaloglu

Frontiers Artif. Intell., 2021

Federated Learning in Healthcare is the Future, But the Problems Are Contemporary.

Mustafa Y. Topaloglu, Elisabeth M. Morrell, Umit Topaloglu

Proceedings of the 17th International Conference on Web Information Systems and Technologies, 2021

Evaluating Site-Level Implementations of the HL7 FHIR Standard to Support eSource Data Exchange in Clinical Research.

Maryam Y. Garza, Michael W. Rutherford, Bhargav Adagarla, Eric L. Eisenstein, Karan R. Kumar, Kanecia O. Zimmerman, Umit Topaloglu, Meredith N. Zozus

Proceedings of the Public Health and Informatics, 2021

COVID-19 Mortality Prediction among Patients with Cancer Using a Large National Cohort.

Feifan Liu, Noha Sharafeldin, Vithal Madhira, Katie R. Bradwell, Qianqian Song, Benjamin Bates, Yu R. Shao, Jing Su, Alfred Anzalone, Timothym Bergquist, Sarah Cutrona, Ben S. Gerber, Peter N. Robinson, Justin Guinney, Umit Topaloglu

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Pragmatic Patient Reported Outcomes via EHR Patient Portal vs. Telephone: A Pilot Randomized Controlled Trial among Adults with Epilepsy and Anxiety or Depression Symptoms.

Heidi M. Munger Clary, Beverly M. Snively, Umit Topaloglu, Pamela Duncan, James Kimball, Halley Alexander, Gretchen A. Brenes

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Leveraging Single-cell Data through Graph-based Artificial Intelligence.

Qianqian Song, Umit Topaloglu, Jing Su, Wei Zhang

Proceedings of the AMIA 2020, 2020

Evaluating the Coverage of the HL7® FHIR® Standard to Support eSource Data Exchange Implementations for use in Multi-Site Clinical Research Studies.

Maryam Y. Garza, Michael W. Rutherford, Sahiti Myneni, Susan H. Fenton, Anita Walden, Umit Topaloglu, Eric L. Eisenstein, Karan R. Kumar, Kanecia Zimmerman, Mitra Rocca, Scott Gordon, Sam Hume, Zhan Wang, Meredith N. Zozus

Proceedings of the AMIA 2020, 2020

Extraction of Diagnosis codes from Health Reports using available NLP tools for a performant implementation in an Academic Medical Center.

Arnav Bhandari, Michael Horvath, Greg Kucera, Umit Topaloglu

Proceedings of the AMIA 2020, 2020

Understanding facilitators and barriers to development and adoption of EHR-to-eCRF technology in multi-site clinical research.

Bhargav Adagarla, Maryam Y. Garza, Karan R. Kumar, Umit Topaloglu, Anita Walden, Kanecia Zimmerman, Meredith N. Zozus, Eric L. Eisenstein

Proceedings of the AMIA 2020, 2020

2019

Developing Biomedical Informatics Capability to Support Learning Health System: Challenges and Potential Solutions.

Martin S. Kohn, Umit Topaloglu, Metin N. Gurcan, Brian Wells, Ajay Dharod

Proceedings of the AMIA 2019, 2019

2015

An Analytics Approach for Adverse Drug Event Discovery.

Mohammadreza Rezaie, Kenji Yoshigoe, Umit Topaloglu

Proceedings of the AMIA 2015, 2015

2014

Social network analysis of biomedical research collaboration networks in a CTSA institution.

Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, Hari Eswaran, William R. Hogan

J. Biomed. Informatics, 2014

2013

Developing a semantically rich ontology for the biobank-administration domain.

Mathias Brochhausen, Martin N. Fransson, Nitin Kanaskar, Mikael Eriksson, Roxana Merino-Martinez, Roger A. Hall, Loreana Norlin, Sanela Kjellqvist, Maria Hortlund, Umit Topaloglu, William R. Hogan, Jan-Eric Litton

J. Biomed. Semant., 2013

SIM: A smartphone-based identity management framework and its application to Arkansas trauma image repository.

Mengjun Xie, Umit Topaloglu, Thomas Powell, Chao Peng, Jiang Bian

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Understanding biomedicai research collaborations through social network analysis: A case study.

Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, William R. Hogan

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Towards large-scale twitter mining for drug-related adverse events.

Jiang Bian, Umit Topaloglu, Fan Yu

Proceedings of the 2012 International Workshop on Smart Health and Wellbeing, 2012

2010

A Secure Distributed File System for Medical Image Archiving.

Jiang Bian, Remzi Seker, Umit Topaloglu

Proceedings of the 2010 IEEE Second International Conference on Social Computing, 2010

Concept integration from the caTIES to i2b2 using the UMLS semantic network.

Vincent Yip, Umit Topaloglu

Proceedings of the ACM International Health Informatics Symposium, 2010

2009

Automatic identification of angiogenesis in double stained images of liver tissue.

Mutlu Mete, Leah Hennings, Horace J. Spencer III, Umit Topaloglu

BMC Bioinform., 2009

Design of a Lattice-based Access Control Scheme.

Chia-Chu Chiang, Coskun Bayrak, Remzi Seker, Umit Topaloglu, Rustu Murat Demirer, Nasrola Samadi, Suleyman Tek, Jiang Bian, GuangXu Zhou, Xiaoran Wang

Proceedings of the IEEE International Conference on Systems, 2009

Statistical comparison of color model-classifier pairs in hematoxylin and eosin stained histological images.

Mutlu Mete, Umit Topaloglu

Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008

Secure mobile agent execution in virtual environment.

Umit Topaloglu, Coskun Bayrak

Auton. Agents Multi Agent Syst., 2008

Off-the-Record Secure Chat Room.

Jiang Bian, Remzi Seker, Umit Topaloglu, Coskun Bayrak

Proceedings of the WEBIST 2008, 2008

A role-based secure group communication framework.

Jiang Bian, Umit Topaloglu, Remzi Seker, Coskun Bayrak, Chia-Chu Chiang

Proceedings of the 3rd IEEE International Conference on System of Systems Engineering, 2008

2007

Off-the-Record Instant Messaging for Group Conversation.

Jiang Bian, Remzi Seker, Umit Topaloglu

Proceedings of the IEEE International Conference on Information Reuse and Integration, 2007

2006

"Who Stole the Bat?" Deception Detection on the Basis of Actions.

James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson

Proceedings of the IEEE International Conference on Systems, 2006

A Child's Story to Illustrate Automated Reasoning Systems Using Opportunity and History.

James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson

Proceedings of the Intelligence and Security Informatics, 2006

2005

Globus security model for grid environment.

Nitin Kanaskar, Umit Topaloglu, Coskun Bayrak

ACM SIGSOFT Softw. Eng. Notes, 2005

Secure Mobile Agent Deployment and Communication Towards Autonomous Semantic Grid.

Umit Topaloglu, Coskun Bayrak, Nitin Kanaskar

Proceedings of the Innovative Concepts for Autonomic and Agent-Based Systems, 2005

Polymorphic Compression.

Umit Topaloglu, Coskun Bayrak

Proceedings of the Computer and Information Sciences, 2005

2001

Process Control via Internet.

Z. G. Altun, Umit Topaloglu, A. V. Saygin, Coskun Bayrak

Trans. SDPS, 2001