Ulisses Dias

Orcid: 0000-0002-4763-3046

According to our database1, Ulisses Dias authored at least 60 papers between 2009 and 2024.

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Bibliography

2024
Rearrangement Distance Problems: An updated survey.
ACM Comput. Surv., August, 2024

Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems.
Proceedings of the Comparative Genomics - 21st International Conference, 2024

2023
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information.
J. Comput. Biol., August, 2023

Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations.
J. Bioinform. Comput. Biol., April, 2023

Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Reversal and Indel Distance With Intergenic Region Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Approximation algorithms for sorting by k-cuts on signed permutations.
J. Comb. Optim., 2023

Block Interchange and Reversal Distance on Unbalanced Genomes.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2023

2022
Labeled Cycle Graph for Transposition and Indel Distance.
J. Comput. Biol., 2022

A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2022

Sorting by k-Cuts on Signed Permutations.
Proceedings of the Comparative Genomics - 19th International Conference, 2022

A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions.
Proceedings of the Comparative Genomics - 19th International Conference, 2022

Transposition Distance Considering Intergenic Regions for Unbalanced Genomes.
Proceedings of the Bioinformatics Research and Applications - 18th International Symposium, 2022

2021
Heuristics for Genome Rearrangement Distance With Replicated Genes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Sorting Permutations by Intergenic Operations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Sorting Signed Permutations by Intergenic Reversals.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Genome Rearrangement Distance with Reversals, Transpositions, and Indels.
J. Comput. Biol., 2021

Reversals and transpositions distance with proportion restriction.
J. Bioinform. Comput. Biol., 2021

Incorporating intergenic regions into reversal and transposition distances with indels.
J. Bioinform. Comput. Biol., 2021

An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes.
Algorithms Mol. Biol., 2021

Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions.
Proceedings of the XI Latin and American Algorithms, Graphs and Optimization Symposium, 2021

Reversals Distance Considering Flexible Intergenic Regions Sizes.
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021

Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information.
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021

2020
Heuristics for the Reversal and Transposition Distance Problem.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

A Multirepresentational Fusion of Time Series for Pixelwise Classification.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2020

Image-Based Time Series Representations for Pixelwise Eucalyptus Region Classification: A Comparative Study.
IEEE Geosci. Remote. Sens. Lett., 2020

On the Complexity of Some Variations of Sorting by Transpositions.
J. Univers. Comput. Sci., 2020

Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes.
J. Comput. Biol., 2020

Sorting by Reversals and Transpositions with Proportion Restriction.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

Heuristics for Reversal Distance Between Genomes with Duplicated Genes.
Proceedings of the Algorithms for Computational Biology, 2020

A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions.
Proceedings of the Algorithms for Computational Biology, 2020

2019
On the Complexity of Sorting by Reversals and Transpositions Problems.
J. Comput. Biol., 2019

Sorting by Weighted Reversals and Transpositions.
J. Comput. Biol., 2019

Super short operations on both gene order and intergenic sizes.
Algorithms Mol. Biol., 2019

Block-Interchange Distance Considering Intergenic Regions.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2019

Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes.
Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019

Pixelwise Remote Sensing Image Classification Based on Recurrence Plot Deep Features.
Proceedings of the 2019 IEEE International Geoscience and Remote Sensing Symposium, 2019

2018
A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Sorting signed circular permutations by super short operations.
Algorithms Mol. Biol., 2018

Super Short Reversals on Both Gene Order and Intergenic Sizes.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2018

Flood Detection from Social Multimedia and Satellite Images Using Ensemble and Transfer Learning with CNN Architectures.
Proceedings of the Working Notes Proceedings of the MediaEval 2018 Workshop, 2018

Transfer Learning with CNN Architectures for Classifying Gastrointestinal Diseases and Anatomical Landmarks.
Proceedings of the Working Notes Proceedings of the MediaEval 2018 Workshop, 2018

Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem.
Proceedings of the Algorithms for Computational Biology - 5th International Conference, 2018

2017
On the Sorting by Reversals and Transpositions Problem.
J. Univers. Comput. Sci., 2017

2015
Sorting by weighted inversions considering length and symmetry.
BMC Bioinform., December, 2015

Sorting by Prefix Reversals and Prefix Transpositions.
Discret. Appl. Math., 2015

2014
A general heuristic for genome rearrangement problems.
J. Bioinform. Comput. Biol., 2014

Length and Symmetry on the Sorting by Weighted Inversions Problem.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2014

An improved algorithm for the sorting by reversals and transpositions problem.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013
Heuristics for the Transposition Distance Problem.
J. Bioinform. Comput. Biol., 2013

Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions.
Proceedings of the ACM Conference on Bioinformatics, 2013

Heuristics for the Sorting by Length-Weighted Inversion Problem.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Genoma comparison problems.
PhD thesis, 2012

SIS: a program to generate draft genome sequence scaffolds for prokaryotes.
BMC Bioinform., 2012

Sorting genomes using almost-symmetric inversions.
Proceedings of the ACM Symposium on Applied Computing, 2012

2011
Using inversion signatures to generate draft genome sequence scaffolds.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes.
Proceedings of the Comparative Genomics - International Workshop, 2010

An improved 1.375-approximation algorithm for the transposition distance problem.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Constraint Programming Models for Transposition Distance Problem.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2009


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