Tudor Groza

Orcid: 0000-0003-2267-8333

According to our database1, Tudor Groza authored at least 68 papers between 2006 and 2024.

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Bibliography

2024
An evaluation of GPT models for phenotype concept recognition.
BMC Medical Informatics Decis. Mak., December, 2024

REAL: A Retrieval-Augmented Entity Linking Approach for Biomedical Concept Recognition.
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

2023
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts.
Bioinform., December, 2023

The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource.
Nucleic Acids Res., January, 2023

PDCM Finder: an open global research platform for patient-derived cancer models.
Nucleic Acids Res., January, 2023

The International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease.
Nucleic Acids Res., January, 2023

2020
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.
F1000Research, 2020

2019
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.
Nucleic Acids Res., 2019

2018
CogStack - experiences of deploying integrated information retrieval and extraction services in a large National Health Service Foundation Trust hospital.
BMC Medical Informatics Decis. Mak., 2018

2017
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2017

The Human Phenotype Ontology in 2017.
Nucleic Acids Res., 2017

Extracting Disease-Phenotype Relations from Text with Disease-Phenotype Concept Recognisers and Association Rule Mining.
Proceedings of the 30th IEEE International Symposium on Computer-Based Medical Systems, 2017

2016
Modelling expertise at different levels of granularity using semantic similarity measures in the context of collaborative knowledge-curation platforms.
J. Intell. Inf. Syst., 2016

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.
J. Biomed. Semant., 2016

The digital revolution in phenotyping.
Briefings Bioinform., 2016

Building a dictionary of lexical variants for phenotype descriptors.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

2015
Extracting structured data from publications in the Art Conservation Domain.
Digit. Scholarsh. Humanit., 2015

Special issue on bio-ontologies and phenotypes.
J. Biomed. Semant., 2015

Capturing domain knowledge from multiple sources: the rare bone disorders use case.
J. Biomed. Semant., 2015

Concept selection for phenotypes and diseases using learn to rank.
J. Biomed. Semant., 2015

Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora.
Database J. Biol. Databases Curation, 2015

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.
Database J. Biol. Databases Curation, 2015

UQeResearch: Semantic Textual Similarity Quantification.
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

Similarity Metrics for Clustering PubMed Abstracts for Evidence Based Medicine.
Proceedings of the Australasian Language Technology Association Workshop, 2015

2014
Inferring characteristic phenotypes via class association rule mining in the bone dysplasia domain.
J. Biomed. Informatics, 2014

Identifying scientific artefacts in biomedical literature: The Evidence Based Medicine use case.
J. Biomed. Informatics, 2014

Semantic interestingness measures for discovering association rules in the skeletal dysplasia domain.
J. Biomed. Semant., 2014

Load Balancing for Imbalanced Data Sets: Classifying Scientific Artefacts for Evidence Based Medicine.
Proceedings of the PRICAI 2014: Trends in Artificial Intelligence, 2014

Automated Generation of Test Suites for Error Analysis of Concept Recognition Systems.
Proceedings of the Australasian Language Technology Association Workshop, 2014

2013
A review of argumentation for the Social Semantic Web.
Semantic Web, 2013

From raw publications to Linked Data.
Knowl. Inf. Syst., 2013

State of the art and open challenges in community-driven knowledge curation.
J. Biomed. Informatics, 2013

Semantic and Time-Dependent Expertise Profiling Models in Community-Driven Knowledge Curation Platforms.
Future Internet, 2013

Reasoning on Crowd-Sourced Semantic Annotations to Facilitate Cataloguing of 3D Artefacts in the Cultural Heritage Domain.
Proceedings of the Semantic Web - ISWC 2013, 2013

Using silver and semi-gold standard corpora to compare open named entity recognisers.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Advances in Semantic Authoring and Publishing
Studies on the Semantic Web 13, IOS Press, ISBN: 978-3-89838-672-2, 2012

Supervised segmentation of phenotype descriptions for the human skeletal phenome using hybrid methods.
BMC Bioinform., 2012

The Bone Dysplasia Ontology: integrating genotype and phenotype information in the skeletal dysplasia domain.
BMC Bioinform., 2012

Semantic Similarity-Driven Decision Support in the Skeletal Dysplasia Domain.
Proceedings of the Semantic Web - ISWC 2012, 2012

Experiences with Modeling Composite Phenotypes in the SKELETOME Project.
Proceedings of the Semantic Web - ISWC 2012, 2012

2011
Capturing Rhetoric and Argumentation Aspects within Scientific Publications.
J. Data Semant., 2011

A Novel Approach for Interacting with Linked Open Data.
Proceedings of the Web Information System Engineering - WISE 2011, 2011

Using Semantic Web Technologies to Build a Community-Driven Knowledge Curation Platform for the Skeletal Dysplasia Domain.
Proceedings of the Semantic Web - ISWC 2011, 2011

Linking Semantic Desktop Data to the Web of Data.
Proceedings of the Semantic Web - ISWC 2011, 2011

High Speed Capture, Retrieval and Rendering of Segment-Based Annotations on 3D Museum Objects.
Proceedings of the Digital Libraries: For Cultural Heritage, Knowledge Dissemination, and Future Creation, 2011

Interacting with Linked Data via Semantically Annotated Widgets.
Proceedings of the Semantic Web - Joint International Semantic Technology Conference, 2011

The NEPOMUK Semantic Desktop.
Proceedings of the Context and Semantics for Knowledge Management, 2011

2010
Towards Knowledge-Based Life Science Publication Repositories.
Proceedings of the Semantic e-Science, 2010

CORAAL - Dive into publications, bathe in the knowledge.
J. Web Semant., 2010

Towards automatic extraction of epistemic items from scientific publications.
Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010

Publishing Semantic Personal Notes as Linked Data.
Proceedings of the EKAW2010 Poster and Demo Track, Lisbon, Portugal, October 11 - 15, 2010, 2010

Argumentation 3.0: how Semantic Web technologies can improve argumentation modeling in Web 2.0 environments.
Proceedings of the Computational Models of Argument: Proceedings of COMMA 2010, 2010

Towards Consolidated Presence.
Proceedings of the 6th International Conference on Collaborative Computing: Networking, 2010

From Personal Notes to Linked Social Media.
Proceedings of the Linked Data Meets Artificial Intelligence, 2010

2009
An Abstract Framework for Modeling Argumentation in Virtual Communities.
Int. J. Virtual Communities Soc. Netw., 2009

Bridging the Gap between Linked Data and the Semantic Desktop.
Proceedings of the Semantic Web - ISWC 2009, 8th International Semantic Web Conference, 2009

A Hybrid Approach Towards Information Expansion based on Shallow and Deep Metadata.
Proceedings of the KEOD 2009 - Proceedings of the International Conference on Knowledge Engineering and Ontology Development, Funchal, 2009

Knowledge-based search for oncological literature.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

CORAAL - Towards Deep Exploitation of Textual Resources in Life Sciences.
Proceedings of the Artificial Intelligence in Medicine, 2009

2008
Adding Provenance and Evolution Information to Modularized Argumentation Models.
Proceedings of the 2008 IEEE / WIC / ACM International Conference on Web Intelligence, 2008

Expressing Argumentative Discussions in Social Media Sites.
Proceedings of the ISWC2008 Workshop on Social Data on the Web (SDoW2008) Karlsruhe, 2008

KonneXSALT: First Steps Towards a Semantic Claim Federation Infrastructure.
Proceedings of the Semantic Web: Research and Applications, 2008

2007
SALT: Weaving the Claim Web.
Proceedings of the Semantic Web, 2007

SALT - Semantically Annotated LaTeX for Scientific Publications.
Proceedings of the Semantic Web: Research and Applications, 2007

SALT: a semantic approach for generating document representations.
Proceedings of the 2007 ACM Symposium on Document Engineering, 2007

The salt triple: framework editor publisher.
Proceedings of the 2007 ACM Symposium on Document Engineering, 2007

2006
SALT: Semantically Annotated LATEX.
Proceedings of the 1st Semantic Authoring and Annotation Workshop (SAAW2006) located at the 5th International Semantic Web Conference ( ISWC 2006 ) 6th November 2006, 2006


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