Trey Ideker
Orcid: 0000-0002-1708-8454
According to our database1,
Trey Ideker
authored at least 52 papers
between 2000 and 2024.
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Bibliography
2024
Bioinform., 2024
2023
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange.
Bioinform., March, 2023
2021
PLoS Comput. Biol., 2021
2020
2019
Proceedings of the Research in Computational Molecular Biology, 2019
2018
Bioinform., 2018
Proceedings of the Research in Computational Molecular Biology, 2018
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
2017
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression.
F1000Research, 2017
2014
Nucleic Acids Res., 2014
F1000Research, 2014
F1000Research, 2014
2013
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.
PLoS Comput. Biol., 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
2011
Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis.
Proc. Natl. Acad. Sci. USA, 2011
PLoS Comput. Biol., 2011
Bioinform., 2011
Bioinform., 2011
2010
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
Bioinform., 2010
Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.
Bioinform., 2010
2009
Papers on normalization, variable selection, classification or clustering of microarray data.
Bioinform., 2009
2008
PLoS Comput. Biol., 2008
PLoS Comput. Biol., 2008
Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood.
Bioinform., 2008
2007
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
PLoS Comput. Biol., 2006
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks.
J. Comput. Biol., 2006
BMC Bioinform., 2006
Proceedings of the Biocomputing 2006, 2006
2005
Nucleic Acids Res., 2005
VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.
Nucleic Acids Res., 2005
Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
J. Comput. Biol., 2005
Proceedings of the Systems Biology and Regulatory Genomics, 2005
2004
Nucleic Acids Res., 2004
2002
Discovering regulatory and signalling circuits in molecular interaction networks.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
2000
Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data.
J. Comput. Biol., 2000