Trevor Cohen

Orcid: 0000-0003-0159-6697

According to our database1, Trevor Cohen authored at least 135 papers between 2004 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Retrieval augmentation of large language models for lay language generation.
J. Biomed. Informatics, January, 2024

Opportunities for incorporating intersectionality into biomedical informatics.
J. Biomed. Informatics, 2024

Useful blunders: Can automated speech recognition errors improve downstream dementia classification?
J. Biomed. Informatics, 2024

Large language models for biomedicine: foundations, opportunities, challenges, and best practices.
J. Am. Medical Informatics Assoc., 2024

Large language models in biomedicine and health: current research landscape and future directions.
J. Am. Medical Informatics Assoc., 2024

Toward Large Language Models as a Therapeutic Tool: Comparing Prompting Techniques to Improve GPT-Delivered Problem-Solving Therapy.
CoRR, 2024

Toward Automated Detection of Biased Social Signals from the Content of Clinical Conversations.
CoRR, 2024

Reexamining Racial Disparities in Automatic Speech Recognition Performance: The Role of Confounding by Provenance.
CoRR, 2024

Bridging the Skills Gap: Evaluating an AI-Assisted Provider Platform to Support Care Providers with Empathetic Delivery of Protocolized Therapy.
CoRR, 2024

Personalized Jargon Identification for Enhanced Interdisciplinary Communication.
Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

APPLS: Evaluating Evaluation Metrics for Plain Language Summarization.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies.
Proceedings of the Findings of the Association for Computational Linguistics, 2024

2023
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data.
BMC Medical Informatics Decis. Mak., December, 2023

Investigating Generalizability of Speech-based Suicidal Ideation Detection Using Mobile Phones.
Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., December, 2023

The Power of Speech in the Wild: Discriminative Power of Daily Voice Diaries in Understanding Auditory Verbal Hallucinations Using Deep Learning.
Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., September, 2023

Discerning conversational context in online health communities for personalized digital behavior change solutions using Pragmatics to Reveal Intent in Social Media (PRISM) framework.
J. Biomed. Informatics, April, 2023

From benchmark to bedside: transfer learning from social media to patient-provider text messages for suicide risk prediction.
J. Am. Medical Informatics Assoc., 2023

Enhancing Robustness of Foundation Model Representations under Provenance-related Distribution Shifts.
CoRR, 2023

Deep Representations of First-person Pronouns for Prediction of Depression Symptom Severity.
CoRR, 2023

Backdoor Adjustment of Confounding by Provenance for Robust Text Classification of Multi-institutional Clinical Notes.
CoRR, 2023

APPLS: A Meta-evaluation Testbed for Plain Language Summarization.
CoRR, 2023

TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments.
CoRR, 2023

2022
Fully automated detection of formal thought disorder with Time-series Augmented Representations for Detection of Incoherent Speech (TARDIS).
J. Biomed. Informatics, 2022

The Far Side of Failure: Investigating the Impact of Speech Recognition Errors on Subsequent Dementia Classification.
CoRR, 2022

CELLS: A Parallel Corpus for Biomedical Lay Language Generation.
CoRR, 2022

Improving Classification of Infrequent Cognitive Distortions: Domain-Specific Model vs. Data Augmentation.
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies: Student Research Workshop, 2022

Predicting Drug Blood-Brain Barrier Penetration with Adverse Event Report Embeddings.
Proceedings of the AMIA 2022, 2022

Identifying opportunities for informatics-supported suicide prevention: the case of Caring Contacts.
Proceedings of the AMIA 2022, 2022

GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models.
Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

2021
Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance.
J. Biomed. Informatics, 2021

Augmenting aer2vec: Enriching distributed representations of adverse event report data with orthographic and lexical information.
J. Biomed. Informatics, 2021

Quantum Mathematics in Artificial Intelligence.
J. Artif. Intell. Res., 2021

Crossing the "Cookie Theft" Corpus Chasm: Applying What BERT Learns From Outside Data to the ADReSS Challenge Dementia Detection Task.
Frontiers Comput. Sci., 2021

Should Semantic Vector Composition be Explicit? Can it be Linear.
CoRR, 2021

Transitions Between Electronic and Combustible Cigarettes: A Mixed Methods Analysis of Peer Interactions in an Online Community for Tobacco Cessation.
Proceedings of the Public Health and Informatics, 2021

Linguistic indicators of Behavioral Activation in text-based therapy sessions anticipate changes in depression symptomatology.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Automated Lay Language Summarization of Biomedical Scientific Reviews.
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020
SCOR: A secure international informatics infrastructure to investigate COVID-19.
J. Am. Medical Informatics Assoc., 2020

Improving Biomedical Analogical Retrieval with Embedding of Structural Dependencies.
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020

The Centroid Cannot Hold: Comparing Sequential and Global Estimates of Coherence as Indicators of Formal Thought Disorder.
Proceedings of the AMIA 2020, 2020

Retrofitting Vector Representations of Adverse Event Reporting Data to Structured Knowledge to Improve Pharmacovigilance Signal Detection.
Proceedings of the AMIA 2020, 2020

A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type.
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020

2019
Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text.
J. Biomed. Informatics, 2019

Cost-aware active learning for named entity recognition in clinical text.
J. Am. Medical Informatics Assoc., 2019

aer2vec: Distributed Representations of Adverse Event Reporting System Data as a Means to Identify Drug/Side-Effect Associations.
Proceedings of the AMIA 2019, 2019

Complementing Observational Signal with Distributed Representations for Drug Side-effect Prediction.
Proceedings of the AMIA 2019, 2019

Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications.
Proceedings of the AMIA 2019, 2019

2018
Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications.
J. Am. Medical Informatics Assoc., 2018

DataMed - an open source discovery index for finding biomedical datasets.
J. Am. Medical Informatics Assoc., 2018

The Portrayal of Quit Emotions: Content-Sensitive Analysis of Peer Interactions in an Online Community for Smoking Cessation.
Proceedings of the Social, Cultural, and Behavioral Modeling, 2018

Bringing Order to Neural Word Embeddings with Embeddings Augmented by Random Permutations (EARP).
Proceedings of the 22nd Conference on Computational Natural Language Learning, 2018

Clinical text annotation - what factors are associated with the cost of time?
Proceedings of the AMIA 2018, 2018

2017
An active learning-enabled annotation system for clinical named entity recognition.
BMC Medical Informatics Decis. Mak., 2017

Embedding of semantic predications.
J. Biomed. Informatics, 2017

Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content.
J. Biomed. Informatics, 2017

Measuring content overlap during handoff communication using distributional semantics: An exploratory study.
J. Biomed. Informatics, 2017

Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017

Temporal Trends of Psychosociobehavioral Factors Underlying Tobacco Use: A Semi-Automated Exploratory Analysis of Peer-to-Peer Communication in a Health-Related Online Community.
Proceedings of the pHealth 2017, 2017

Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge.
Proceedings of the AMIA 2017, 2017

2016
Improving the utility of MeSH® terms using the TopicalMeSH representation.
J. Biomed. Informatics, 2016

Automated identification of molecular effects of drugs (AIMED).
J. Am. Medical Informatics Assoc., 2016

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov.
J. Am. Medical Informatics Assoc., 2016

Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus.
Proceedings of the Quantum Interaction - 10th International Conference, 2016


A Study of Active Learning for Document Selection in Clinical Named Entity Recognition.
Proceedings of the AMIA 2016, 2016

Analyzing Similarities in Handoff Communication Content between Residents and Nurses.
Proceedings of the AMIA 2016, 2016

Characterization of Temporal Semantic Shifts of Peer-to-peer Communication in a Health-related Online Community: Implications for Data-driven Health Promotion.
Proceedings of the AMIA 2016, 2016

Content-specific network analysis of peer-to-peer communication in an online community for smoking cessation.
Proceedings of the AMIA 2016, 2016

Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships.
Proceedings of the AMIA 2016, 2016

Semantic Relatedness and Similarity between Biomedical Concepts.
Proceedings of the AMIA 2016, 2016

Literature-Based Discovery of Confounding in Observational Clinical Data.
Proceedings of the AMIA 2016, 2016


Retrofitting Word Vectors of MeSH Terms to Improve Semantic Similarity Measures.
Proceedings of the Seventh International Workshop on Health Text Mining and Information Analysis, 2016

2015
Reasoning with vectors: A continuous model for fast robust inference.
Log. J. IGPL, 2015

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.
Database J. Biol. Databases Curation, 2015

Graded Semantic Vectors: An Approach to Representing Graded Quantities in Generalized Quantum Models.
Proceedings of the Quantum Interaction - 9th International Conference, 2015

Embedding Probabilities in Predication Space with Hermitian Holographic Reduced Representations.
Proceedings of the Quantum Interaction - 9th International Conference, 2015

Improving Retrieval of PubMed Articles Using the TopicalMeSH Representation.
Proceedings of the AMIA 2015, 2015

Evaluating the Effects of Cognitive Support on Interpreting ICU Patient Data.
Proceedings of the AMIA 2015, 2015

Real Time Active Learning Study for Clinical Named Entity Recognition.
Proceedings of the AMIA 2015, 2015

2014
Identifying plausible adverse drug reactions using knowledge extracted from the literature.
J. Biomed. Informatics, 2014

Evaluating the effects of cognitive support on psychiatric clinical comprehension.
Artif. Intell. Medicine, 2014

Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search.
Proceedings of the Quantum Interaction - 8th International Conference, 2014

Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Facilitating Visual Exploration of System-generated Reasoning Pathways underlying Drug-Side effect Relations.
Proceedings of the AMIA 2014, 2014

A study of synonym extraction from clinical texts using semantic vector models.
Proceedings of the AMIA 2014, 2014

Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy.
Proceedings of the AMIA 2014, 2014

2013
Understanding the nature of information seeking behavior in critical care: Implications for the design of health information technology.
Artif. Intell. Medicine, 2013

Orthogonality and Orthography: Introducing Measured Distance into Semantic Space.
Proceedings of the Quantum Interaction - 7th International Conference, 2013

Identifying Persuasive Qualities of Decentralized Peer-to-Peer Online Social Networks in Public Health.
Proceedings of the Persuasive Technology - 8th International Conference, 2013

Finding Meaning in Social Media: Content-based Social Network Analysis of QuitNet to Identify New Opportunities for Health Promotion.
Proceedings of the MEDINFO 2013, 2013

Evaluation of Vector Space Models for Medical Disorders Information Retrieval.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Individual Attributes of Behavior Change in an Online Social Network.
Proceedings of the AMIA 2013, 2013

Word Sense Disambiguation of Clinical Abbreviations with Hyperdimensional Computing.
Proceedings of the AMIA 2013, 2013

Reflective Random Indexing to Develop a Medication-Problem Knowledge Base.
Proceedings of the AMIA 2013, 2013

Characterizing the Effects of a Cognitive Support System for Psychiatric Clinical Comprehension Venkata V.K. Dalai, MBBS, MPH, Dinesh Gottipatti, MS. Thomas Kannampallil, MS. Vineeth John, MD, MBA. Trevor Cohen, MBChB, PhD. University of Texas School of Biomedical Informatics1. New York Academy of Medicine2. University of Texas Medical School at Houston3.
Proceedings of the AMIA 2013, 2013

2012
Avatar-based simulation in the evaluation of diagnosis and management of mental health disorders in primary care.
J. Biomed. Informatics, 2012

Enhancing clinical concept extraction with distributional semantics.
J. Biomed. Informatics, 2012

Discovering discovery patterns with predication-based Semantic Indexing.
J. Biomed. Informatics, 2012

Focus on information retrieval: Predicting biomedical document access as a function of past use.
J. Am. Medical Informatics Assoc., 2012

Graph-based signal integration for high-throughput phenotyping.
BMC Bioinform., 2012

Real, Complex, and Binary Semantic Vectors.
Proceedings of the Quantum Interaction - 6th International Symposium, 2012

Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies.
Proceedings of the Quantum Interaction - 6th International Symposium, 2012

Discovery by scent: Discovery browsing system based on the Information Foraging Theory.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Discovery at a distance: Farther journeys in predication space.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Deterministic Binary Vectors for Efficient Automated Indexing of MEDLINE/PubMed Abstracts.
Proceedings of the AMIA 2012, 2012

Reducing Cognitive Load: Exploring Knowledge Model-driven Clinical Information Displays.
Proceedings of the AMIA 2012, 2012

Designing a Learning Technology for Community Health Workers.
Proceedings of the AMIA 2012, 2012

Hyperdimensional Computing Approach to Word Sense Disambiguation.
Proceedings of the AMIA 2012, 2012

2011
Toward automated workflow analysis and visualization in clinical environments.
J. Biomed. Informatics, 2011

Recovery at the edge of error: Debunking the myth of the infallible expert.
J. Biomed. Informatics, 2011

Considering complexity in healthcare systems.
J. Biomed. Informatics, 2011

Making sense: Sensor-based investigation of clinician activities in complex critical care environments.
J. Biomed. Informatics, 2011

MEDRank: Using graph-based concept ranking to index biomedical texts.
Int. J. Medical Informatics, 2011

Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space.
Proceedings of the Quantum Interaction - 5th International Symposium, 2011

2010
Reflective random indexing for semi-automatic indexing of the biomedical literature.
J. Biomed. Informatics, 2010

Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections.
J. Biomed. Informatics, 2010

The Semantic Vectors Package: New Algorithms and Public Tools for Distributional Semantics.
Proceedings of the 4th IEEE International Conference on Semantic Computing (ICSC 2010), 2010

The Trajectory of Scientific Discovery: Concept Co-Occurrence and Converging Semantic Distance.
Proceedings of the MEDINFO 2010, 2010

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2010

Logical Leaps and Quantum Connectives: Forging Paths through Predication Space.
Proceedings of the Quantum Informatics for Cognitive, 2010

2009
Empirical distributional semantics: Methods and biomedical applications.
J. Biomed. Informatics, 2009

Semantic Vector Combinations and the Synoptic Gospels.
Proceedings of the Quantum Interaction, Third International Symposium, 2009

Visualization and Analysis of Activities in Critical Care Environments.
Proceedings of the AMIA 2009, 2009

The Cognitive Basis of Effective Team Performance: Features of Failure and Success in Simulated Cardiac Resuscitation.
Proceedings of the AMIA 2009, 2009

Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space.
Proceedings of the AMIA 2009, 2009

2008
Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative.
J. Biomed. Informatics, 2008

Exploring MEDLINE Space with Random Indexing and Pathfinder Networks.
Proceedings of the AMIA 2008, 2008

2007
Research Paper: Reevaluating Recovery: Perceived Violations and Preemptive Interventions on Emergency Psychiatry Rounds.
J. Am. Medical Informatics Assoc., 2007

2006
Customizing clinical narratives for the electronic medical record interface using cognitive methods.
Int. J. Medical Informatics, 2006

A cognitive blueprint of collaboration in context: Distributed cognition in the psychiatric emergency department.
Artif. Intell. Medicine, 2006

2005
Exploring dangerous neighborhoods: Latent Semantic Analysis and computing beyond the bounds of the familiar.
Proceedings of the AMIA 2005, 2005

2004
Cognitive Evaluation of an Innovative Psychiatric Clinical Knowledge Enhancement System.
Proceedings of the MEDINFO 2004, 2004


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