Travis S. Johnson

According to our database, Travis S. Johnson authored at least 9 papers between 2017 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency.

Elham Jafari, Travis S. Johnson, Yue Wang, Yunlong Liu, Kun Huang, Yijie Wang

Bioinform., November, 2022

TSAFinder: exhaustive tumor-specific antigen detection with RNAseq.

Michael F. Sharpnack, Travis S. Johnson, Robert Chalkley, Zhi Han, David Carbone, Kun Huang, Kai He

Bioinform., 2022

SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression.

Yusong Liu, Tongxin Wang, Ben Duggan, Michael F. Sharpnack, Kun Huang, Jie Zhang, Xiufen Ye, Travis S. Johnson

Briefings Bioinform., 2022

2020

PgenePapers: a novel database and search tools of reported regulatory pseudogenes.

Achal Awasthi, Shenglong Tan, Travis S. Johnson, Xiaokui-Molly Mo, Kunjie Fan, Yan Zhang

Int. J. Comput. Biol. Drug Des., 2020

2019

A protocol to evaluate RNA sequencing normalization methods.

Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes

BMC Bioinform., 2019

LAmbDA: label ambiguous domain adaptation dataset integration reduces batch effects and improves subtype detection.

Travis S. Johnson, Tongxin Wang, Zhi Huang, Christina Y. Yu, Yi Wu, Yatong Han, Yan Zhang, Kun Huang, Jie Zhang

Bioinform., 2019

Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data.

Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Network analysis of pseudogene-gene relationships: from pseudogene evolution to their functional potentials.

Travis S. Johnson, Sihong Li, Jonathan R. Kho, Kun Huang, Yan Zhang

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017

Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing.

Travis S. Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017