Torsten Schwede

According to our database, Torsten Schwede authored at least 28 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone.

Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede

Bioinform., January, 2024

LIGATE - LIgand Generator and portable drug discovery platform AT Exascale.

Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Erik Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner

Proceedings of the 21st ACM International Conference on Computing Frontiers, 2024

2023

Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach.

Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner

Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

2021

ProMod3 - A versatile homology modelling toolbox.

Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Marco Biasini, Niklaus Johner, Torsten Schwede

PLoS Comput. Biol., 2021

2020

QMEANDisCo - distance constraints applied on model quality estimation.

Gabriel Studer, Christine Rempfer, Andrew Waterhouse, Rafal Gumienny, Juergen Haas, Torsten Schwede

Bioinform., 2020

SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data.

Diana Coman Schmid, Katrin Crameri, Sabine Oesterle, Bernd Rinn, Thierry Sengstag, Heinz Stockinger, Leila T. Alexander, Jonathan Barda, Christian Bolliger, Urban Borstnik, Gerhard Bräunlich, Olivier Byrde, Jérôme Dauvillier, Robin Engler, Pablo Escobar Lopez, Volker Flegel, Martin Fox, Sofia Georgakopoulou, Jani Heikkinen, Martin Jacquot, Nicolas Kowenski, Guillermo Losilla, Sergio Maffioletti, Jorge Molina, Diego Moreno, Allen Neeser, Michal Okoniewski, Warren Paulus, Kevin Sayers, Torsten Schwede, Jaroslaw Surkont, Richard Wartenburger, Thomas Wüst

Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

2018

SWISS-MODEL: homology modelling of protein structures and complexes.

Andrew Waterhouse, Martino Bertoni, Stefan Bienert, Gabriel Studer, Gerardo Tauriello, Rafal Gumienny, Florian T. Heer, Tjaart A. P. de Beer, Christine Rempfer, Lorenza Bordoli, Rosalba Lepore, Torsten Schwede

Nucleic Acids Res., 2018

2017

The SWISS-MODEL Repository - new features and functionality.

Stefan Bienert, Andrew Waterhouse, Tjaart A. P. de Beer, Gerardo Tauriello, Gabriel Studer, Lorenza Bordoli, Torsten Schwede

Nucleic Acids Res., 2017

2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel

Nucleic Acids Res., 2014

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.

Marco Biasini, Stefan Bienert, Andrew Waterhouse, Konstantin Arnold, Gabriel Studer, Tobias Schmidt, Florian Kiefer, Tiziano Gallo Cassarino, Martino Bertoni, Lorenza Bordoli, Torsten Schwede

Nucleic Acids Res., 2014

Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane).

Gabriel Studer, Marco Biasini, Torsten Schwede

Bioinform., 2014

2013

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

Valerio Mariani, Marco Biasini, Alessandro Barbato, Torsten Schwede

Bioinform., 2013

The Protein Model Portal - a comprehensive resource for protein structure and model information.

Juergen Haas, Steven Roth, Konstantin Arnold, Florian Kiefer, Tobias Schmidt, Lorenza Bordoli, Torsten Schwede

Database J. Biol. Databases Curation, 2013

2012

ECCB 2012: The 11^th European Conference on Computational Biology.

Torsten Schwede, Dagmar Iber

Bioinform., 2012

Improving your target-template alignment with MODalign.

Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski

Bioinform., 2012

2011

Toward the estimation of the absolute quality of individual protein structure models.

Pascal Benkert, Marco Biasini, Torsten Schwede

Bioinform., 2011

2010

Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing.

Jürgen Haas, Torsten Schwede

ERCIM News, 2010

OpenStructure: a flexible software framework for computational structural biology.

Marco Biasini, Valerio Mariani, Jürgen Haas, Stefan Scheuber, Andreas D. Schenk, Torsten Schwede, Ansgar Philippsen

Bioinform., 2010

2009

The SWISS-MODEL Repository and associated resources.

Florian Kiefer, Konstantin Arnold, Michael Künzli, Lorenza Bordoli, Torsten Schwede

Nucleic Acids Res., 2009

The protein structure initiative structural genomics knowledgebase.

Helen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer

Nucleic Acids Res., 2009

QMEAN server for protein model quality estimation.

Pascal Benkert, Michael Künzli, Torsten Schwede

Nucleic Acids Res., 2009

2007

Tandem Mass Spectrometry Protein Identification on a PC Grid.

Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede

Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

SWISS-TANDEM: A Web-Based Workspace for MS/MS Protein Identification on PC Grids.

Dominique Zosso, Konstantin Arnold, Torsten Schwede, Michael Podvinec

Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007

2006

The SWISS-MODEL Repository: new features and functionalities.

Jürgen Kopp, Torsten Schwede

Nucleic Acids Res., 2006

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Konstantin Arnold, Lorenza Bordoli, Jürgen Kopp, Torsten Schwede

Bioinform., 2006

The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned.

Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

2004

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.

Jürgen Kopp, Torsten Schwede

Nucleic Acids Res., 2004

2003

SWISS-MODEL: an automated protein homology-modeling server.

Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch

Nucleic Acids Res., 2003