Tomoya Mori

According to our database, Tomoya Mori authored at least 22 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

DiCleave: a deep learning model for predicting human Dicer cleavage sites.

Lixuan Mu, Jiangning Song, Tatsuya Akutsu, Tomoya Mori

BMC Bioinform., December, 2024

2023

eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells.

Tomoya Mori, Toshiro Takase, Kuan-Chun Lan, Junko Yamane, Cantas Alev, Azuma Kimura, Kenji Osafune, Jun K. Yamashita, Tatsuya Akutsu, Hiroaki Kitano, Wataru Fujibuchi

BMC Bioinform., December, 2023

2022

Identification of periodic attractors in Boolean networks using a priori information.

Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu

PLoS Comput. Biol., 2022

On the Complexity of Tree Edit Distance with Variables.

Tatsuya Akutsu, Tomoya Mori, Naotoshi Nakamura, Satoshi Kozawa, Yuhei Ueno, Thomas N. Sato

Proceedings of the 33rd International Symposium on Algorithms and Computation, 2022

2021

Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas.

Tatsuya Akutsu, Tomoya Mori, Naotoshi Nakamura, Satoshi Kozawa, Yuhei Ueno, Thomas N. Sato

CoRR, 2021

2020

mROS: A Lightweight Runtime Environment of ROS 1 nodes for Embedded Devices.

Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi

J. Inf. Process., 2020

Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance.

Feiqi Wang, Tatsuya Akutsu, Tomoya Mori

J. Comput. Biol., 2020

2019

mROS: A Lightweight Runtime Environment for Robot Software Components onto Embedded Devices.

Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi

Proceedings of the 10th International Symposium on Highly-Efficient Accelerators and Reconfigurable Technologies, 2019

2018

Design concept of a lightweight runtime environment for robot software components onto embedded devices: work-in-progress.

Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi

Proceedings of the International Conference on Embedded Software, 2018

2017

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.

Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu

Bioinform., 2017

Queueing theoretic approach to job assignment strategy considering various inter-arrival of job in fog computing.

Tomoya Mori, Yoichi Utsunomiya, Xuejun Tian, Takashi Okuda

Proceedings of the 19th Asia-Pacific Network Operations and Management Symposium, 2017

2016

Exact Identification of the Structure of a Probabilistic Boolean Network from Samples.

Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models.

Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto

Comput. Stat. Data Anal., 2016

2015

Methods for Analyzing Tree-Structured Data and their Applications to Computational Biology.

Tomoya Mori

PhD thesis, 2015

Similar Subtree Search Using Extended Tree Inclusion.

Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu

IEEE Trans. Knowl. Data Eng., 2015

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.

Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp

BMC Syst. Biol., 2015

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.

Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu

BMC Syst. Biol., 2015

Experiments of position estimation by BLE beacons on actual situations.

Tomoya Mori, Shinsuke Kajioka, Takahiro Uchiya, Ichi Takumi, Hiroshi Matsuo

Proceedings of the IEEE 4th Global Conference on Consumer Electronics, 2015

2014

An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data.

Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu

J. Comput. Biol., 2014

Experiment of indoor position presumption based on RSSI of Bluetooth LE beacon.

Shinsuke Kajioka, Tomoya Mori, Takahiro Uchiya, Ichi Takumi, Hiroshi Matsuo

Proceedings of the IEEE 3rd Global Conference on Consumer Electronics, 2014

2012

A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees.

Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu

J. Comput. Biol., 2012

2011

An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures.

Tatsuya Akutsu, Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita

Proceedings of the International Conference on Complex, 2011