Tomasz Lipniacki

According to our database, Tomasz Lipniacki authored at least 14 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The MAPK/ERK channel capacity exceeds 6 bit/hour.

Pawel Nalecz-Jawecki, Paolo Armando Gagliardi, Marek Kochanczyk, Coralie Dessauges, Olivier Pertz, Tomasz Lipniacki

PLoS Comput. Biol., 2023

A Decision Making Model Where the Cell Exhibits Maximum Detection Probability: Statistical Signal Detection Theory and Molecular Experimental Data.

Ali Emadi, Tomasz Lipniacki, Andre Levchenko, Ali Abdi

Proceedings of the 57th Annual Conference on Information Sciences and Systems, 2023

2022

Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts.

Robert C. Mines, Tomasz Lipniacki, Xiling Shen

PLoS Comput. Biol., 2022

Epidemic model with strain-dependent transmission rate.

Malay Banerjee, Tomasz Lipniacki, Alberto d'Onofrio, Vitaly Volpert

Commun. Nonlinear Sci. Numer. Simul., 2022

2017

Computation and measurement of cell decision making errors using single cell data.

Iman Habibi, Raymond Cheong, Tomasz Lipniacki, Andre Levchenko, Effat S. Emamian, Ali Abdi

PLoS Comput. Biol., 2017

SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.

Marek Kochanczyk, William S. Hlavacek, Tomasz Lipniacki

Bioinform., 2017

2016

Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System.

Beata Hat, Marek Kochanczyk, Marta N. Bogdal, Tomasz Lipniacki

PLoS Comput. Biol., 2016

2015

Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics.

Karol Nienaltowski, Michal Wlodarczyk, Tomasz Lipniacki, Michal Komorowski

BMC Syst. Biol., 2015

2013

A Spatially Extended Model of Kinase-Receptor Interaction.

Elaine Crooks, Bogdan Kazmierczak, Tomasz Lipniacki

SIAM J. Appl. Math., 2013

Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate.

Marta N. Bogdal, Beata Hat, Marek Kochanczyk, Tomasz Lipniacki

BMC Syst. Biol., 2013

2011

B Cell Activation Triggered by the Formation of the Small Receptor Cluster: A Computational Study.

Beata Hat, Bogdan Kazmierczak, Tomasz Lipniacki

PLoS Comput. Biol., 2011

2007

Adjoint Systems for Models of Cell Signaling Pathways and their Application to Parameter Fitting.

Krzysztof Fujarewicz, Marek Kimmel, Tomasz Lipniacki, Andrzej Swierniak

IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Single TNF<i>alpha </i>trimers mediating NF-<i>kappa</i>B activation: stochastic robustness of NF-<i>kappa</i>B signaling.

Tomasz Lipniacki, Krzysztof Puszynski, Pawel Paszek, Allan R. Brasier, Marek Kimmel

BMC Bioinform., 2007

2001

Statics of Rigid Units Chain.

Tomasz Lipniacki

Int. J. Bifurc. Chaos, 2001