Tomas Oppelstrup

According to our database, Tomas Oppelstrup authored at least 18 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Breaking the Molecular Dynamics Timescale Barrier Using a Wafer-Scale System.

Kylee Santos, Stan G. Moore, Tomas Oppelstrup, Amirali Sharifian, Ilya Sharapov, Aidan P. Thompson, Delyan Z. Kalchev, Danny Perez, Robert Schreiber, Scott Pakin, Edgar A. Leon, James H. Laros III, Michael James, Sivasankaran Rajamanickam

CoRR, 2024

Breaking the Molecular Dynamics Timescale Barrier Using a Wafer-Scale System.

Kylee Santos, Stan Moore, Tomas Oppelstrup, Amirali Sharifian, Ilya Sharapov, Aidan P. Thompson, Delyan Z. Kalchev, Danny Perez, Robert Schreiber, Scott Pakin, Edgar A. Leon, James H. Laros III, Michael James, Sivasankaran Rajamanickam

Proceedings of the International Conference for High Performance Computing, 2024

2022

A biology-informed similarity metric for simulated patches of human cell membrane.

Harsh Bhatia, Jayaraman J. Thiagarajan, Rushil Anirudh, T. S. Jayram, Tomas Oppelstrup, Helgi I. Ingólfsson, Felice C. Lightstone, Peer-Timo Bremer

Mach. Learn. Sci. Technol., 2022

2021

Machine-learning-based dynamic-importance sampling for adaptive multiscale simulations.

Harsh Bhatia, Timothy S. Carpenter, Helgi I. Ingólfsson, Gautham Dharuman, Piyush Karande, Shusen Liu, Tomas Oppelstrup, Chris Neale, Felice C. Lightstone, Brian Van Essen, James N. Glosli, Peer-Timo Bremer

Nat. Mach. Intell., 2021

Generalizable coordination of large multiscale workflows: challenges and learnings at scale.

Harsh Bhatia, Francesco Di Natale, Joseph Y. Moon, Xiaohua Zhang, Joseph R. Chavez, Fikret Aydin, Christopher B. Stanley, Tomas Oppelstrup, Chris Neale, Sara Kokkila Schumacher, Dong H. Ahn, Stephen Herbein, Timothy S. Carpenter, Sandrasegaram Gnanakaran, Peer-Timo Bremer, James N. Glosli, Felice C. Lightstone, Helgi I. Ingólfsson

Proceedings of the International Conference for High Performance Computing, 2021

2020

Reversible Languages and Incremental State Saving in Optimistic Parallel Discrete Event Simulation.

Markus Schordan, Tomas Oppelstrup, Michael Kirkedal Thomsen, Robert Glück

Proceedings of the Reversible Computation: Extending Horizons of Computing, 2020

2019

A massively parallel infrastructure for adaptive multiscale simulations: modeling RAS initiation pathway for cancer.

Francesco Di Natale, Harsh Bhatia, Timothy S. Carpenter, Chris Neale, Sara Kokkila Schumacher, Tomas Oppelstrup, Liam Stanton, Xiaohua Zhang, Shiv Sundram, Thomas R. W. Scogland, Gautham Dharuman, Michael P. Surh, Yue Yang, Claudia Misale, Lars Schneidenbach, Carlos H. A. Costa, Changhoan Kim, Bruce D'Amora, Sandrasegaram Gnanakaran, Dwight V. Nissley, Frederick H. Streitz, Felice C. Lightstone, Peer-Timo Bremer, James N. Glosli, Helgi I. Ingólfsson

Proceedings of the International Conference for High Performance Computing, 2019

2018

Generation of Reversible C++ Code for Optimistic Parallel Discrete Event Simulation.

Markus Schordan, Tomas Oppelstrup, David R. Jefferson, Peter D. Barnes Jr.

New Gener. Comput., 2018

2017

Exploratory Modeling and Simulation of the Evolutionary Dynamics of Single-Stranded RNA Virus Populations.

Jae-Seung Yeom, Tanya Kostova-Vassilevska, Peter D. Barnes Jr., David R. Jefferson, Tomas Oppelstrup

Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

2016

Automatic Generation of Reversible C++ Code and Its Performance in a Scalable Kinetic Monte-Carlo Application.

Markus Schordan, Tomas Oppelstrup, David R. Jefferson, Peter D. Barnes Jr., Daniel J. Quinlan

Proceedings of the 2016 annual ACM Conference on SIGSIM Principles of Advanced Discrete Simulation, 2016

SPOCK: Exact Parallel Kinetic Monte-Carlo on 1.5 Million Tasks.

Tomas Oppelstrup, David R. Jefferson, Vasily V. Bulatov, Luis A. Zepeda-Ruiz

Proceedings of the 2016 annual ACM Conference on SIGSIM Principles of Advanced Discrete Simulation, 2016

2015

Massively parallel models of the human circulatory system.

Amanda Randles, Erik W. Draeger, Tomas Oppelstrup, Liam Krauss, John A. Gunnels

Proceedings of the International Conference for High Performance Computing, 2015

Reverse Code Generation for Parallel Discrete Event Simulation.

Markus Schordan, David R. Jefferson, Peter D. Barnes Jr., Tomas Oppelstrup, Daniel J. Quinlan

Proceedings of the Reversible Computation - 7th International Conference, 2015

2013

Matrix compression by common subexpression elimination.

Tomas Oppelstrup

J. Comput. Phys., 2013

Science at LLNL with IBM Blue Gene/Q.

Brian Carnes, Bor Chan, Erik W. Draeger, Jean-Luc Fattebert, Larry Fried, James N. Glosli, William D. Krauss, Steve H. Langer, Rose McCallen, Arthur A. Mirin, Fady Najjar, Albert L. Nichols, Tomas Oppelstrup, James A. Rathkopf, David F. Richards, Frederick H. Streitz, Pavlos Vranas, John Jeremy Rice, John A. Gunnels, Viatcheslav Gurev, Changhoan Kim, John Magerlein, Matthias Reumann, Hui-Fang Wen

IBM J. Res. Dev., 2013

2012

Toward real-time modeling of human heart ventricles at cellular resolution: simulation of drug-induced arrhythmias.

Arthur A. Mirin, David F. Richards, James N. Glosli, Erik W. Draeger, Bor Chan, Jean-Luc Fattebert, William D. Krauss, Tomas Oppelstrup, John Jeremy Rice, John A. Gunnels, Viatcheslav Gurev, Changhoan Kim, John Magerlein, Matthias Reumann, Hui-Fang Wen

Proceedings of the SC Conference on High Performance Computing Networking, 2012

2011

Poster: a highly efficient MGPT implementation for LAMMPS; with strong scaling.

Tomas Oppelstrup, Alexander Stukowski, Jaime Marian

Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011

2010

A First-Passage Kinetic Monte Carlo algorithm for complex diffusion-reaction systems.

Aleksandar Donev, Vasily V. Bulatov, Tomas Oppelstrup, George H. Gilmer, Babak Sadigh, Malvin H. Kalos

J. Comput. Phys., 2010