Tomás Di Domenico

According to our database, Tomás Di Domenico authored at least 20 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

APPRIS: selecting functionally important isoforms.

José Manuel Rodriguez, Fernando Pozo, Daniel Cerdán-Vélez, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress

Nucleic Acids Res., 2022

bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses.

Luis García-Jimeno, Coral Fustero Torre, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour

Bioinform., 2022

2021

GENCODE 2021.

Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek

Nucleic Acids Res., 2021

2020

An analysis of tissue-specific alternative splicing at the protein level.

José Manuel Rodriguez, Fernando Pozo, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress

PLoS Comput. Biol., 2020

2019

GENCODE reference annotation for the human and mouse genomes.

Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek

Nucleic Acids Res., 2019

vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer.

Javier Perales-Patón, Tomás Di Domenico, Coral Fustero Torre, Elena Piñeiro-Yáñez, Carlos Carretero-Puche, Héctor Tejero, Alfonso Valencia, Gonzalo Gómez-López, Fátima Al-Shahrour

Bioinform., 2019

2018

APPRIS 2017: principal isoforms for multiple gene sets.

José Manuel Rodriguez, Juan Rodriguez-Rivas, Tomás Di Domenico, Jesús Vázquez, Alfonso Valencia, Michael L. Tress

Nucleic Acids Res., 2018

2015

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.

Emilio Potenza, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto

Nucleic Acids Res., 2015

Highlights from the tenth ISCB Student Council Symposium 2014.

Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico

BMC Bioinform., 2015

Comprehensive large-scale assessment of intrinsic protein disorder.

Ian Walsh, Manuel Giollo, Tomás Di Domenico, Carlo Ferrari, Olav Zimmermann, Silvio C. E. Tosatto

Bioinform., 2015

2014

RepeatsDB: a database of tandem repeat protein structures.

Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto

Nucleic Acids Res., 2014

Highlights from the ISCB Student Council Symposium 2013.

Tomás Di Domenico, Cynthia Prudence, Esmeralda Vicedo, Emre Guney, Anupama Jigisha, Avinash Kumar Shanmugam

BMC Bioinform., 2014

2013

ISCB Computational Biology Wikipedia Competition.

Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost

PLoS Comput. Biol., 2013

Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.

Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto

BMC Bioinform., 2013

2012

RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.

Ian Walsh, Francesco Sirocco, Giovanni Minervini, Tomás Di Domenico, Carlo Ferrari, Silvio C. E. Tosatto

Bioinform., 2012

ESpritz: accurate and fast prediction of protein disorder.

Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Silvio C. E. Tosatto

Bioinform., 2012

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

Tomás Di Domenico, Ian Walsh, Alberto J. M. Martin, Silvio C. E. Tosatto

Bioinform., 2012

2011

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.

Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Alessandro Vullo, Gianluca Pollastri, Silvio C. E. Tosatto

Nucleic Acids Res., 2011

RING: networking interacting residues, evolutionary information and energetics in protein structures.

Alberto J. M. Martin, Michele Vidotto, Filippo Boscariol, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto

Bioinform., 2011

2010

Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification.

Cristina Marino Buslje, Elin Teppa, Tomás Di Domenico, José María Delfino, Morten Nielsen

PLoS Comput. Biol., 2010